AIRI-Institute / GENA_LM
GENA-LM is a transformer masked language model trained on human DNA sequence.
☆191Updated this week
Alternatives and similar repositories for GENA_LM:
Users that are interested in GENA_LM are comparing it to the libraries listed below
- Spatial Epitope Modeling with Artificial intelligence (SEMA)☆36Updated last year
- ☆29Updated last year
- Lo-Hi Splitter for Modern Splits of Molecular Datasets☆53Updated 6 months ago
- GOLF: Gradual Optimization Learning for Conformational Energy Minimization☆19Updated 8 months ago
- Materials for Transcripromics Data Analysis course at Moscow State University☆65Updated last year
- A library for full-stack aging clocks design and benchmarking.☆29Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆114Updated 5 months ago
- Benchmarks for classification of genomic sequences☆140Updated last month
- Code for modes and training of DeepZ paper☆8Updated 4 years ago
- nablaDFT: Large-Scale Conformational Energy and Hamiltonian Prediction benchmark and dataset☆204Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆256Updated last week
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆139Updated 2 weeks ago
- Repository for mRNA Paper and CodonBERT publication.☆127Updated 10 months ago
- "NA Figure": visualization of the missing data distribution☆15Updated last year
- ☆10Updated 11 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆35Updated 6 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆61Updated 3 months ago
- RNA-seq prediction with deep convolutional neural networks.☆140Updated last month
- Genomic Pre-trained Network☆263Updated 3 weeks ago
- Primary RNA sequence model☆36Updated 11 months ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆102Updated last month
- A generative latent variable model for biological sequence families.☆214Updated 3 years ago
- ☆73Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆130Updated 3 weeks ago
- ☆21Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 8 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆250Updated 2 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆49Updated this week
- ☆29Updated 2 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆40Updated 11 months ago