Alternatives and similar repositories for Stem:

Users that are interested in Stem are comparing it to the libraries listed below

• JiawenChenn / STimage-1K4M
  ☆58Updated last month
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆72Updated 5 months ago
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆21Updated last month
• mahmoodlab / HEST
  A toolkit for integrating histology and spatial transcriptomics - NeurIPS 2024
  ☆256Updated last month
• NEXGEM / TRIPLEX
  ☆26Updated last week
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆115Updated 3 years ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆78Updated last year
• biomed-AI / Hist2ST
  ☆37Updated 2 years ago
• mahmoodlab / TANGLE
  Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆94Updated 5 months ago
• yrjia1015 / THItoGene
  Code for the THItoGene
  ☆20Updated 9 months ago
• AI4SCR / MatchCLOT
  Python package implementing our method MatchCLOT for multimodal single-cell data integration
  ☆13Updated last year
• whiteyunjie / ROAM
  A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…
  ☆32Updated 3 months ago
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆36Updated 3 years ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆67Updated 2 years ago
• Cassie07 / PathOmics
  [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)
  ☆92Updated 3 weeks ago
• konst-int-i / healnet
  Multimodal fusion for heterogeneous biomedical data. NeurIPS 2024.
  ☆51Updated 3 months ago
• Biooptics2021 / PathFinder
  ☆50Updated last year
• Yan98 / EGN
  Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction
  ☆14Updated last year
• mahmoodlab / PANTHER
  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆121Updated last month
• tatonetti-lab / tcga-path-reports
  TCGA Pathology Reports in Machine Readable Text
  ☆40Updated 10 months ago
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆31Updated last year
• mahmoodlab / MADELEINE
  MADELEINE: multi-stain slide representation learning (ECCV'24)
  ☆49Updated last month
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆86Updated last week
• Hanminghao / UMPIRE
  ☆12Updated 3 weeks ago
• ralphc1212 / bayes-mil
  Code of "Bayes-MIL: A New Probabilistic Perspective on Attention-based Multiple Instance Learning for Whole Slide Images" - ICLR 2023
  ☆18Updated last year
• taliq / TEA-graph
  First commit
  ☆61Updated 2 years ago
• Weiqin-Zhao / Hist2Cell
  ☆12Updated 6 months ago
• raminnakhli / AMIGO
  This is the pytorch\DGL implementation of the AMIGO paper.
  ☆11Updated last year
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆31Updated last month
• Boom5426 / Awesome-Phenotypic-Drug-Discovery
  PDD: Awesome Phenotypic Drug Discovery
  ☆22Updated this week