SichenZhu / Stem
[ICLR 2025] Stem: Gene Expression Inference from Histology Images
☆25Updated last week
Alternatives and similar repositories for Stem:
Users that are interested in Stem are comparing it to the libraries listed below
- ☆59Updated 2 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆76Updated 6 months ago
- ☆31Updated last week
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆21Updated 2 months ago
- PyTorch implementation of HisToGene☆38Updated 3 years ago
- Code of "Bayes-MIL: A New Probabilistic Perspective on Attention-based Multiple Instance Learning for Whole Slide Images" - ICLR 2023☆19Updated last year
- ☆40Updated 2 years ago
- Pytorch implementation for H2GT (ICME 2024)☆18Updated 5 months ago
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆33Updated 4 months ago
- Her2 Breast Cancer Project☆71Updated 2 years ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆97Updated 6 months ago
- [MICCAI 2023 Oral] The official code of "Pathology-and-genomics Multimodal Transformer for Survival Outcome Prediction" (top 9%)☆91Updated last month
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆265Updated last month
- ☆31Updated 3 weeks ago
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆13Updated last year
- [MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis☆33Updated 7 months ago
- MADELEINE: multi-stain slide representation learning (ECCV'24)☆52Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆82Updated last year
- TCGA Pathology Reports in Machine Readable Text☆43Updated 10 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆90Updated last month
- ☆51Updated last year
- Code for the THItoGene☆23Updated 2 weeks ago
- Inference code for HoVer-NeXt☆33Updated 2 weeks ago
- Multimodal prototyping for cancer survival prediction - ICML 2024☆81Updated 2 months ago
- ☆11Updated 2 months ago
- Efficient Approach for Guided Local Examination in Digital Pathology☆19Updated last month
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆123Updated 2 months ago
- Deep learning on histopathology images.☆117Updated 3 years ago
- ☆12Updated 9 months ago
- ☆12Updated 7 months ago