SichenZhu / StemLinks
[ICLR 2025] Stem: Gene Expression Inference from Histology Images
☆45Updated 9 months ago
Alternatives and similar repositories for Stem
Users that are interested in Stem are comparing it to the libraries listed below
Sorting:
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Updated last year
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆36Updated 6 months ago
- ☆79Updated 8 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆26Updated 5 months ago
- Her2 Breast Cancer Project☆92Updated 3 years ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Updated last month
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Updated last year
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆361Updated this week
- PyTorch implementation of HisToGene☆52Updated 4 years ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆128Updated 8 months ago
- ☆28Updated 10 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Updated last year
- ☆53Updated 3 years ago
- ☆19Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- ☆52Updated 10 months ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Updated 10 months ago
- Code for the THItoGene☆28Updated 9 months ago
- ☆48Updated 8 months ago
- Deep learning on histopathology images.☆140Updated 4 years ago
- Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024☆114Updated last year
- ☆44Updated last year
- ☆14Updated 8 months ago
- Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".☆43Updated 5 months ago
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆52Updated last week
- Single-cell spatial elucidation through image-augmented graph transformer☆34Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆149Updated 2 months ago
- Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023☆14Updated 11 months ago
- ☆71Updated 11 months ago
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Updated 7 months ago