☆13Nov 3, 2026Updated this week
Alternatives and similar repositories for spatiato
Users that are interested in spatiato are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A GPU-accelerated web application for visualization, annotation and sharing of spatial biology data☆15Updated this week
- A BioIO reader plugin for reading Zarr files in the OME format.☆15Sep 8, 2026Updated last month
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- OMERO.web plugin for the Vitessce multimodal data viewer.☆14Jul 29, 2026Updated 3 months ago
- Analysis framework for morphological profiling data☆15Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆22Updated this week
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Oct 16, 2026Updated 2 weeks ago
- ☆21Oct 15, 2026Updated 3 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆87Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆26Aug 7, 2026Updated 2 months ago
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 7 months ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆27Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆24Oct 21, 2026Updated 2 weeks ago
- Facilitating the use of Deep Visual Proteomics☆28Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A toolkit to test, validate, and improve agentic skills.☆18Updated this week
- AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated co…☆25Oct 11, 2026Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆84Updated this week
- Use dimensionality reduction to create thumnails for high-dimensional imaging☆12May 21, 2026Updated 5 months ago
- Curated agent skills for MS-proteomics data analysis☆17Oct 14, 2026Updated 3 weeks ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Oct 26, 2026Updated last week
- Morphological features from images and masks made easy.☆53Updated this week
- Fast 4-coloring of instance segmentation label images (N-color relabeling) for Python, C++ core☆16Sep 28, 2026Updated last month
- Dataframe-agnostic Zarr Storage powered by Narwhals☆10Dec 1, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆30Oct 28, 2026Updated last week
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Updated this week
- ☆20Updated this week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- A library for interfacing with SpatialData stores in TS/JS☆11Updated this week
- A Python toolkit for quantitative and visual quality control of segmentation and transcript assignment in spatial omics data.☆42Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- Links between modalities in mudata☆17Oct 16, 2026Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of…☆16Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Sep 23, 2026Updated last month
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Oct 29, 2026Updated last week
- NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurat…☆13Updated this week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago