Automated batch processing of tissue microscopy image data with a text-based interface
☆10Mar 24, 2026Updated 7 months ago
Alternatives and similar repositories for T-MIDAS
Users that are interested in T-MIDAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated batch processing of cell and tissue microscopy image data in Napari☆24Oct 21, 2026Updated 3 weeks ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 5 months ago
- A BioIO reader plugin for reading Zarr files in the OME format.☆15Updated this week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 8 months ago
- ☆15Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Nov 2, 2026Updated last week
- Linearize your support queue☆10Updated this week
- An introduction to OME-Zarr for big bioimaging data☆30Updated this week
- ☆27Oct 30, 2026Updated last week
- Tiled processing of arbitrarily large images — any image, any function.☆20Nov 3, 2026Updated last week
- ☆14Updated this week
- Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.☆11Oct 29, 2026Updated last week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 11 months ago
- An interactive terminal image viewer that renders images as ASCII art, Unicode blocks, and colorful ANSI text. Zoom and pan through PNG, …☆19Nov 1, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A napari plugin to view and edit layer metadata☆15Nov 2, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- network-flow based object tracking☆10Sep 14, 2026Updated last month
- Segment images utilizing pre-trained neural networks as feature extractors☆56Nov 2, 2026Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- OMERO.web plugin for the Vitessce multimodal data viewer.☆14Jul 29, 2026Updated 3 months ago
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 4 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Nov 3, 2026Updated last week
- ☆13Jun 18, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ilastik plugin for napari☆15Mar 2, 2026Updated 8 months ago
- ☆15Jun 28, 2026Updated 4 months ago
- A napari plugin to analysis point spread functions.☆11Apr 27, 2026Updated 6 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆31Jun 16, 2026Updated 4 months ago
- A fully scalable robust image feature extraction library.☆30Updated this week
- load ome-zarr files in xarray☆11Nov 2, 2026Updated last week
- ☆15Apr 1, 2026Updated 7 months ago
- Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.☆15Dec 22, 2025Updated 10 months ago
- ☆15Sep 4, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Dataframe-agnostic Zarr Storage powered by Narwhals☆10Dec 1, 2025Updated 11 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆19Oct 20, 2026Updated 3 weeks ago
- ☆17Aug 3, 2026Updated 3 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 11 months ago
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 4 years ago
- napari plugin to open CZI image files and their metadata☆17Updated this week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
Are these results useful?