Alternatives and similar repositories for autolamella:

Users that are interested in autolamella are comparing it to the libraries listed below

• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆24Updated last month
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆12Updated 2 months ago
• KosinskiLab / colabseg
  Jupyter-based tool for membrane segmentation manipulation
  ☆9Updated last year
• builab / subtomo2Chimera
  ☆18Updated 2 months ago
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆16Updated 4 months ago
• rkms86 / SUSAN
  ☆10Updated last month
• alisterburt / dynamo2emClarity
  A tool for conversion between subtomogram averaging softwares Dynamo and emClarity
  ☆9Updated 5 years ago
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆10Updated 3 years ago
• wright-cemrc-projects / cryoet-montage
  SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.
  ☆16Updated 6 months ago
• cryo-et-standards / cryoet-geometry
  A possible schema for cryoET geometry metadata
  ☆10Updated 3 months ago
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 2 weeks ago
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆32Updated 3 years ago
• DeMarcoLab / fibsem
  A universal API for FIBSEM control
  ☆28Updated this week
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆31Updated last year
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆25Updated 2 months ago
• CellArchLab / cryoet-scripts
  Miscellaneous scripts for processing cryo-ET data
  ☆12Updated 2 months ago
• bionanopatterning / Ais
  ☆16Updated 3 weeks ago
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆18Updated 11 months ago
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆28Updated last week
• brisvag / blik
  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
  ☆24Updated 4 months ago
• dtegunov / membranorama
  A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.
  ☆15Updated 2 years ago
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆23Updated 2 weeks ago
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆18Updated 7 months ago
• brisvag / stemia
  Scripts and Tools for Electron Microscopy Image Analysis.
  ☆11Updated 6 months ago
• warpem / warp
  ☆51Updated this week
• nysbc / appion-protomo
  A Docker-based distribution of Appion-Protomo.
  ☆11Updated 4 years ago
• EuanPyle / relion4_tomo_robot
  Automated workflow for preparing tilt series data for RELION 4.0.
  ☆14Updated last year
• SBC-Utrecht / pytom-match-pick
  GPU-accelerated template matching for cryo-ET
  ☆34Updated 2 weeks ago
• bionanopatterning / scNodes
  ☆13Updated 2 months ago
• czimaginginstitute / AreTomo2
  ☆46Updated 8 months ago