DeMarcoLab / autolamella
autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
☆19Updated last week
Related projects ⓘ
Alternatives and complementary repositories for autolamella
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆19Updated 3 weeks ago
- Jupyter-based tool for membrane segmentation manipulation☆9Updated 6 months ago
- a tool for using surfaces to explore volumetric data in napari☆16Updated 2 months ago
- ☆18Updated last year
- Singularity image for cryo-CARE☆27Updated 2 years ago
- A universal API for FIBSEM control☆27Updated this week
- ☆10Updated 2 weeks ago
- A tool to support interactive machine learning for cryoET data☆10Updated 2 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆23Updated 2 months ago
- PIP package of cryoCARE☆26Updated 7 months ago
- automated on-the-fly tilt-series alignment☆9Updated 3 years ago
- cryo-EM tomogram simulator☆20Updated this week
- Smart Parallel Automated Cryo Electron tomography☆18Updated this week
- A tool for conversion between subtomogram averaging softwares Dynamo and emClarity☆9Updated 5 years ago
- SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.☆16Updated 3 weeks ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆18Updated 6 months ago
- ☆43Updated 3 months ago
- GPU-accelerated template matching for cryo-ET☆29Updated this week
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆18Updated 2 weeks ago
- ☆10Updated 5 months ago
- cryolo documentation☆9Updated 6 months ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆30Updated 9 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆27Updated 8 months ago
- ☆40Updated this week
- SmartScope is a framework for systematic evaluation of cryo-EM specimens☆15Updated this week
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆22Updated 4 months ago
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆14Updated this week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆30Updated 3 months ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Updated last month
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆22Updated this week