autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
☆19Jul 24, 2025Updated 8 months ago
Alternatives and similar repositories for autolamella
Users that are interested in autolamella are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A universal API for FIBSEM control☆30Jun 26, 2025Updated 8 months ago
- A Docker-based distribution of Appion-Protomo.☆11Oct 23, 2020Updated 5 years ago
- scripts to monitor cryo-em jobs☆10Sep 29, 2021Updated 4 years ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆43Mar 11, 2025Updated last year
- ☆37Mar 22, 2024Updated 2 years ago
- a tool for using surfaces to explore volumetric data in napari☆19Feb 25, 2026Updated last month
- Smart Parallel Automated Cryo Electron tomography☆24Mar 13, 2026Updated last week
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Nov 25, 2025Updated 4 months ago
- Cryo-EM micrograph segmentation through deep learning☆22Oct 10, 2025Updated 5 months ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated last month
- Parallel cryo electron tomography via beam image shift☆40Feb 17, 2026Updated last month
- Cryo-EM/ET image analysis☆12Sep 19, 2025Updated 6 months ago
- Miscellaneous scripts for processing cryo-ET data☆22Feb 25, 2025Updated last year
- A CNN for denoising cryo-EM images☆13Dec 9, 2019Updated 6 years ago
- ☆10Feb 19, 2026Updated last month
- ☆41Sep 4, 2025Updated 6 months ago
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Aug 6, 2025Updated 7 months ago
- PIP package of cryoCARE☆46Apr 2, 2024Updated last year
- PyTom software for cryo-tomogram processing☆45Jan 5, 2026Updated 2 months ago
- Singularity image for cryo-CARE☆37Jan 7, 2022Updated 4 years ago
- ☆19Dec 22, 2025Updated 3 months ago
- Two-Dimensional Template Matching implemented in Python☆15Mar 6, 2026Updated 2 weeks ago
- ☆19Jan 23, 2026Updated 2 months ago
- ☆31Feb 22, 2024Updated 2 years ago
- Self-supervised learning for isotropic cryoET reconstruction☆90Dec 29, 2024Updated last year
- Tool for segmentation in bioimaging☆36Mar 16, 2026Updated last week
- A collaborative knowledge sharing platform for the cryo-ET community☆20Aug 7, 2024Updated last year
- ☆26Oct 10, 2025Updated 5 months ago
- juno is a simulation package for optical system design using full wave propagation.☆65Feb 22, 2024Updated 2 years ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆30Dec 1, 2025Updated 3 months ago
- 3D printing data in "Tidy up cryo-EM sample grids with 3D printed tools"☆14Apr 20, 2022Updated 3 years ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Mar 5, 2025Updated last year
- BoxNet implemented in TensorFlow and all current training data☆32Apr 25, 2019Updated 6 years ago
- Colorblind-friendly, perceptually uniform palettes for chimerax☆14Sep 26, 2020Updated 5 years ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 3 weeks ago
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆17Aug 26, 2025Updated 6 months ago
- ☆36Jun 22, 2023Updated 2 years ago
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year