Alternatives and similar repositories for autolamella

Users that are interested in autolamella are comparing it to the libraries listed below

• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆25Updated 9 months ago
• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆19Updated 7 months ago
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆14Updated 4 months ago
• builab / subtomo2Chimera
  ☆19Updated 3 weeks ago
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆19Updated last year
• mastcu / SerialEM
  ☆10Updated this week
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆28Updated last month
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆37Updated 3 years ago
• hanjinliu / cylindra
  Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
  ☆14Updated last week
• alisterburt / autoalign_dynamo
  automated on-the-fly tilt-series alignment
  ☆11Updated 4 years ago
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 5 months ago
• rkms86 / SUSAN
  ☆10Updated last month
• tomotools / tomotools
  Scripts to make cryo-electron tomography a bit easier
  ☆14Updated 4 months ago
• cryo-et-standards / cryoet-geometry
  A possible schema for cryoET geometry metadata
  ☆11Updated 4 months ago
• wright-cemrc-projects / cryoet-montage
  SerialEM, Python, and Unity Simulations for Cryo-Electron Tomography and Montage Tomography.
  ☆16Updated last year
• juglab / cryoCARE_pip
  PIP package of cryoCARE
  ☆42Updated last year
• nysbc / appion-protomo
  A Docker-based distribution of Appion-Protomo.
  ☆11Updated 5 years ago
• jianglab / motioncorr
  motion correction for movies recorded using direct electron detectors
  ☆14Updated 8 years ago
• frosinastojanovska / cryosiam
  Self-supervised deep learning framework for CryoET analysis
  ☆17Updated last week
• czimaginginstitute / AreTomo2
  ☆50Updated last year
• carsonpurnell / cryotomosim_CTS
  cryo-EM tomogram simulator
  ☆29Updated this week
• cellcanvas / cellcanvas-prototype
  A tool to support interactive machine learning for cryoET data
  ☆12Updated last year
• NIEHS / SmartScope
  SmartScope is a framework for systematic evaluation of cryo-EM specimens
  ☆17Updated 7 months ago
• CellArchLab / cryoet-scripts
  Miscellaneous scripts for processing cryo-ET data
  ☆18Updated 9 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆39Updated last year
• CellArchLab / MemBrain
  ☆33Updated 2 years ago
• bionanopatterning / scNodes
  ☆14Updated last month
• KudryashevLab / TomoBEAR
  TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…
  ☆28Updated 5 months ago
• teamtomo / membrain-seg
  membrane segmentation in 3D for cryo-ET
  ☆84Updated 3 weeks ago
• DeMarcoLab / fibsem
  A universal API for FIBSEM control
  ☆30Updated 5 months ago