fhalab / SPGen
☆19Updated 3 years ago
Alternatives and similar repositories for SPGen:
Users that are interested in SPGen are comparing it to the libraries listed below
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated 2 months ago
- Mutation effects predicted from sequence co-variation☆62Updated 7 years ago
- ☆66Updated 4 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆79Updated 10 months ago
- A domain parser for Alphafold models☆32Updated last year
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆49Updated 3 years ago
- A Python 3 version of the protein descriptor package propy☆39Updated last year
- RNA Multiple Sequence Alignment☆30Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆30Updated last week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆50Updated 9 months ago
- ☆49Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆68Updated 2 weeks ago
- Machine learning prediction of enzyme optimum pH☆29Updated last week
- ☆30Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 months ago
- Evolutionary velocity with protein language models☆84Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆32Updated last week
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆40Updated 3 weeks ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Detection of remote homology by comparison of protein language model representations☆47Updated last month
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆49Updated 5 months ago
- ☆25Updated 7 months ago
- Contact map alignment☆41Updated 3 years ago