☆20Mar 31, 2021Updated 5 years ago
Alternatives and similar repositories for SPGen
Users that are interested in SPGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- RXN for biochemical reactions☆76Oct 18, 2022Updated 3 years ago
- World’s first Protein sequence Generative Adversarial Network (ProteinGAN)☆15Dec 20, 2018Updated 7 years ago
- ☆11Dec 9, 2017Updated 8 years ago
- A generative latent variable model for biological sequence families.☆250Mar 15, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Jan 14, 2021Updated 5 years ago
- Multi-class signal peptide prediction and structure decoding model.☆111Feb 4, 2025Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 8 months ago
- ☆30May 15, 2023Updated 2 years ago
- Calculate the RMSD between two protein structures☆12Jun 29, 2022Updated 3 years ago
- Accompanying code for the ProteinGLUE method☆12Apr 12, 2022Updated 4 years ago
- UniRep model, usage, and examples.☆362Mar 1, 2026Updated last month
- A simulation framework to analyze signal flows in complex networks☆15Mar 7, 2023Updated 3 years ago
- ☆37Aug 28, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Biosynthesis Navigator for Natural Products☆56Jul 4, 2022Updated 3 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- Implementation of iMolCLR: "Improving Molecular Contrastive Learning via Faulty Negative Mitigation and Decomposed Fragment Contrast" in …☆20Aug 30, 2022Updated 3 years ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆35Nov 10, 2025Updated 5 months ago
- Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper☆11Nov 21, 2023Updated 2 years ago
- ☆12Aug 3, 2023Updated 2 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated 9 months ago
- Colab notebooks exploring different Machine Learning topics.☆16Apr 2, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Aug 7, 2023Updated 2 years ago
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆35Nov 7, 2022Updated 3 years ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- Making Protein folding accessible to all!☆26Mar 22, 2026Updated last month
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis☆31Feb 6, 2026Updated 2 months ago
- ☆192Feb 8, 2022Updated 4 years ago
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UniProt Id Mapping through API☆38Sep 22, 2025Updated 7 months ago
- Ramirez Lab WIKI, where you could find Tutorials, Script Library, Gallery, FAQ, and a little bit more☆13Sep 11, 2024Updated last year
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 2 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- a language extension library☆14Feb 17, 2025Updated last year
- Prediction of glycopeptide fragment mass spectra by deep learning☆11Feb 20, 2024Updated 2 years ago
- Implementation of ProteinBERT in Pytorch☆164Aug 10, 2021Updated 4 years ago