fhalab / SPGen
☆17Updated 3 years ago
Related projects: ⓘ
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆16Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 5 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆46Updated last month
- Ultra-fast in-silico structure mutation☆32Updated last year
- ☆24Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆58Updated 2 months ago
- ☆62Updated 2 months ago
- Predict the structure of immune receptor proteins☆42Updated last month
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆27Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆26Updated 6 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆51Updated last year
- Mutation effects predicted from sequence co-variation☆59Updated 7 years ago
- A domain parser for Alphafold models☆29Updated 9 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆27Updated last year
- Deep learning prediction of enzyme optimum pH☆22Updated 9 months ago
- ☆28Updated 3 weeks ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆18Updated 3 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆44Updated 5 months ago
- RNA Multiple Sequence Alignment☆24Updated last year
- ☆19Updated 2 years ago
- Alignment-free structure prediction using protein language models☆22Updated last year
- Tool for modelling the CDRs of antibodies☆43Updated last year
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆28Updated 2 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆18Updated last year
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Updated 2 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆18Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆71Updated 5 months ago
- ☆34Updated 2 years ago