fhalab / SPGenLinks
☆20Updated 4 years ago
Alternatives and similar repositories for SPGen
Users that are interested in SPGen are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A Python 3 version of the protein descriptor package propy☆48Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 3 weeks ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- ☆60Updated 3 years ago
- ☆109Updated 2 years ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 10 months ago
- ☆76Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆51Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- ☆56Updated 5 months ago
- pyFoldX: python bindings for FoldX.☆54Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆58Updated 6 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Updated 4 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- Contact map alignment☆42Updated 5 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆71Updated last year
- The DSSP building software☆50Updated 2 years ago
- ☆36Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆113Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- Protein language model trained on coding DNA☆53Updated last year
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last week