fhalab / SPGen
☆19Updated 4 years ago
Alternatives and similar repositories for SPGen
Users that are interested in SPGen are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- ☆49Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆51Updated 5 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆44Updated 4 months ago
- RNA Multiple Sequence Alignment☆40Updated last year
- A domain parser for Alphafold models☆36Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆84Updated last year
- ☆38Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆36Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆51Updated 5 months ago
- ☆62Updated 3 years ago
- Machine learning prediction of enzyme optimum pH☆36Updated 2 weeks ago
- ☆28Updated 11 months ago
- ☆36Updated 4 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- ☆38Updated 7 months ago
- ☆34Updated 3 years ago
- ☆35Updated last year
- ☆68Updated 7 months ago
- Ultra-fast in-silico structure mutation☆33Updated last month
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated last month