fhalab / SPGenLinks
☆20Updated 4 years ago
Alternatives and similar repositories for SPGen
Users that are interested in SPGen are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆107Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆58Updated last month
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Machine learning-driven antibody design☆60Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 3 months ago
- ☆49Updated 2 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- Direct coupling analysis software for protein and RNA sequences☆52Updated 2 months ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- ☆53Updated last month
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆80Updated 2 years ago
- ☆42Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆70Updated 3 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆64Updated last year
- ☆59Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- Contact map alignment☆41Updated 4 years ago
- ☆46Updated 8 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆50Updated 3 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 6 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆80Updated last year
- Protein language model trained on coding DNA☆50Updated 11 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆66Updated 10 months ago
- Neural networks for deep mutational scanning data☆69Updated 4 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago