Alternatives and similar repositories for SPGen:

Users that are interested in SPGen are comparing it to the libraries listed below

• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 3 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆26Updated 4 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 11 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆45Updated 2 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆32Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 3 months ago
• Doudna-lab / GARNET_DL
  ☆33Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated last month
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆55Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆39Updated 3 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated 2 years ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆51Updated 10 months ago
• tymor22 / tm-vec
  ☆65Updated 5 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last month
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆65Updated 10 months ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆44Updated 3 years ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆40Updated 2 years ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆54Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆86Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 4 months ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆41Updated 2 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆29Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 11 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆34Updated 5 months ago