☆20Mar 31, 2021Updated 5 years ago
Alternatives and similar repositories for SPGen
Users that are interested in SPGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- World’s first Protein sequence Generative Adversarial Network (ProteinGAN)☆15Dec 20, 2018Updated 7 years ago
- RXN for biochemical reactions☆76Oct 18, 2022Updated 3 years ago
- TBiNet: A deep neural network for predicting transcription factor binding sites using attention mechanism☆25Jan 14, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Dec 9, 2017Updated 8 years ago
- A generative latent variable model for biological sequence families.☆256Mar 15, 2022Updated 4 years ago
- ☆30May 15, 2023Updated 3 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 10 months ago
- UniRep model, usage, and examples.☆366Mar 1, 2026Updated 4 months ago
- Calculate the RMSD between two protein structures☆12Jun 29, 2022Updated 4 years ago
- Accompanying code for the ProteinGLUE method☆13Apr 12, 2022Updated 4 years ago
- ☆39Aug 28, 2023Updated 2 years ago
- Biosynthesis Navigator for Natural Products☆57Jul 4, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simulation framework to analyze signal flows in complex networks☆15Jun 11, 2026Updated last month
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- Implementation of iMolCLR: "Improving Molecular Contrastive Learning via Faulty Negative Mitigation and Decomposed Fragment Contrast" in …☆20Aug 30, 2022Updated 3 years ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆36Nov 10, 2025Updated 8 months ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated last year
- Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper☆11Nov 21, 2023Updated 2 years ago
- ☆14Aug 3, 2023Updated 2 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆20Jan 15, 2024Updated 2 years ago
- Colab notebooks exploring different Machine Learning topics.☆16Apr 2, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Aug 7, 2023Updated 2 years ago
- ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins☆11Mar 11, 2024Updated 2 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆36Nov 7, 2022Updated 3 years ago
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- Making Protein folding accessible to all!☆26Mar 22, 2026Updated 3 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- ☆189Feb 8, 2022Updated 4 years ago
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆110Mar 7, 2022Updated 4 years ago
- Ramirez Lab WIKI, where you could find Tutorials, Script Library, Gallery, FAQ, and a little bit more☆13Sep 11, 2024Updated last year
- UniProt Id Mapping through API☆40Sep 22, 2025Updated 9 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 3 years ago
- Python toolkit and package for analyzing enzyme activity data☆12Jun 17, 2022Updated 4 years ago
- Implementation of ProteinBERT in Pytorch☆165Aug 10, 2021Updated 4 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago