zhaoshuoxp / Pipelines-Wrappers
Shell wrappers for common NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
☆13Updated 2 months ago
Alternatives and similar repositories for Pipelines-Wrappers:
Users that are interested in Pipelines-Wrappers are comparing it to the libraries listed below
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆54Updated last year
- ☆24Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 5 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆21Updated last week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆30Updated 5 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- single-cell clustering based on alternative splicing landscapes☆16Updated 9 months ago
- Locate transgenic insertion sites☆10Updated last year
- ☆27Updated 3 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated 2 weeks ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 8 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- Some NGS workflow created by snakemake☆13Updated this week
- Tutorial Website☆55Updated 3 years ago
- ☆16Updated last year
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Updated 4 years ago
- ☆30Updated 7 months ago
- RNA editing tests☆16Updated 4 years ago
- ☆15Updated 7 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆20Updated last year
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 8 months ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago