Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
β16Feb 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for Pipelines-Wrappers
Users that are interested in Pipelines-Wrappers are comparing it to the libraries listed below
Sorting:
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awkβ10Aug 2, 2023Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 π£β11Apr 28, 2023Updated 2 years ago
- Plot allele frequencies in VCF filesβ11Jun 4, 2019Updated 6 years ago
- R scripts for NGS data visualizationβ13Oct 1, 2025Updated 5 months ago
- bioinformatics R test codeβ14Feb 1, 2026Updated last month
- β13Sep 1, 2020Updated 5 years ago
- εΊε η»η»θ£ 注ιζ΅η¨εθζ¬β16Feb 12, 2023Updated 3 years ago
- β18Apr 18, 2024Updated last year
- Analysis pipeline for CUT&TAG dataβ23Sep 2, 2020Updated 5 years ago
- Python Scripts for Bioinformaticsβ15Apr 24, 2024Updated last year
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Loβ¦β20Jul 11, 2024Updated last year
- β10Feb 25, 2024Updated 2 years ago
- Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)β20Nov 28, 2024Updated last year
- β14Feb 18, 2026Updated 2 weeks ago
- Get your science on a leash!β29Feb 23, 2026Updated 2 weeks ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly availβ¦β12Sep 6, 2021Updated 4 years ago
- β32Apr 17, 2023Updated 2 years ago
- β36Jan 14, 2024Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.β37Jul 1, 2024Updated last year
- β24Nov 9, 2017Updated 8 years ago
- bioinformatics learningβ13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseqβ12Dec 19, 2022Updated 3 years ago
- Repositoryβ10Oct 23, 2024Updated last year
- Genomic Annotation in Livestock for positional candidate LOciβ13Feb 26, 2021Updated 5 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictogβ¦β13Feb 26, 2026Updated last week
- 3β Tag RNA-seq pipeline (Work in progress)β10Mar 14, 2021Updated 4 years ago
- Locate transgenic insertion sitesβ11Mar 14, 2023Updated 2 years ago
- Overview of the machine learning project and various sub-tasks.β10Feb 19, 2026Updated 2 weeks ago
- Learning to Program via Python, and Scientific Python for Programmers course materialβ13Jan 23, 2025Updated last year
- Westlake BioBank for Chinese pilot projectβ10May 17, 2023Updated 2 years ago
- Scripts in R for Landscape Genomics Analyses v.2β10Feb 17, 2023Updated 3 years ago
- automatic update Clinvar db for ANNOVARβ10Updated this week
- A listing of the commands, protocols and other notes that I take on a daily basisβ11Oct 25, 2023Updated 2 years ago
- Common scriptsβ15Feb 16, 2026Updated 3 weeks ago
- β14Oct 27, 2025Updated 4 months ago
- β10Jan 30, 2020Updated 6 years ago
- Educational Notes on Molecular Modelingβ13Nov 19, 2020Updated 5 years ago
- genome annotation (RNAseq and TE) pipeline (draft)β13Aug 26, 2025Updated 6 months ago
- β10Dec 2, 2025Updated 3 months ago