Alternatives and similar repositories for WES-analysis

Users that are interested in WES-analysis are comparing it to the libraries listed below

• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated this week
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 3 years ago
• dxsbiocc / Workflow
  The snakemake analysis workflow for bioinformatics
  ☆25Updated last year
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated last year
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆68Updated 3 months ago
• zhaoshuoxp / Pipelines-Wrappers
  Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
  ☆15Updated 2 weeks ago
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆62Updated 4 years ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆50Updated 2 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆39Updated last month
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆82Updated 2 years ago
• jumphone / SPRINT
  SNP-free RNA editing Identification Toolkit
  ☆49Updated 9 months ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆23Updated last year
• sjdlabgroup / SAHMI
  ☆84Updated last year
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆86Updated last year
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆45Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆61Updated 4 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆115Updated this week
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆53Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 4 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆35Updated 2 years ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆111Updated 11 months ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆72Updated this week
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆71Updated 4 years ago
• shiquan / PISA
  A collection of tools to process single-cell omics datasets.
  ☆50Updated 4 months ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆44Updated 7 years ago