Alternatives and similar repositories for WES-analysis

Users that are interested in WES-analysis are comparing it to the libraries listed below

• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• pzweuj / pzweuj.github.io
  Go to
  ☆35Updated last week
• xryanglab / RiboCode
  release version
  ☆57Updated 3 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 7 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆66Updated last year
• dxsbiocc / Workflow
  The snakemake analysis workflow for bioinformatics
  ☆25Updated last year
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated last year
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆39Updated last month
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆62Updated 4 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆44Updated 8 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆83Updated 2 years ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆52Updated 2 years ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…
  ☆76Updated last week
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆69Updated 5 months ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆24Updated last year
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆43Updated last year
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆118Updated last year
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆49Updated 6 years ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆74Updated 4 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆61Updated 4 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆82Updated 2 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆78Updated 2 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆63Updated 4 years ago
• zhaoshuoxp / Pipelines-Wrappers
  Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
  ☆16Updated 3 months ago
• nloyfer / UXM_deconv
  ☆49Updated 2 years ago
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆73Updated last year
• Jiawang1209 / ggNetView
  ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex …
  ☆85Updated this week