An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
☆163May 17, 2022Updated 4 years ago
Alternatives and similar repositories for EMOGI
Users that are interested in EMOGI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network …☆12Dec 27, 2022Updated 3 years ago
- Explainable Multilayer Graph Neural Network for Cancer Gene Prediction☆21Nov 3, 2023Updated 2 years ago
- CGMega: dissecting cancer gene module with explainable graph attention network☆19Jul 25, 2024Updated last year
- End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.☆35Jun 30, 2021Updated 4 years ago
- Multi-omics integration method using AE and GCN☆41Jun 7, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆183Mar 31, 2021Updated 5 years ago
- PGCN: Disease gene prioritization by disease and gene embedding through GCN☆79Apr 1, 2024Updated 2 years ago
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆13Aug 7, 2025Updated 10 months ago
- Multi-task deep learning framework for multi-omics data analysis☆53May 5, 2022Updated 4 years ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆167Nov 15, 2021Updated 4 years ago
- TCGA Benchmark Tasks for Clinical Attribute Prediction based on Genome☆14Mar 16, 2021Updated 5 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- ☆17Feb 27, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A deep-learning framework for multi-omics integration☆32Jun 1, 2026Updated last week
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15May 7, 2021Updated 5 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Oct 2, 2019Updated 6 years ago
- Kdrew's scripts for handling protein complex map data☆14May 5, 2026Updated last month
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26May 16, 2026Updated 3 weeks ago
- ☆20Sep 25, 2020Updated 5 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- Codebase for "Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series"☆13Nov 1, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30May 15, 2025Updated last year
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆22Sep 21, 2021Updated 4 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network☆102Jan 21, 2019Updated 7 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆17Mar 2, 2022Updated 4 years ago
- Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data☆10Apr 20, 2026Updated last month
- ☆10Sep 20, 2022Updated 3 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆468Feb 9, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆34Nov 30, 2022Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 4 months ago
- HyperTMO: A trusted multi-omics integration framework based on Hypergraph convolutional network for patient classification☆12Apr 1, 2024Updated 2 years ago
- ☆12Mar 20, 2024Updated 2 years ago
- a deep learning approach for integrative cancer subtyping of multi-omics data☆40May 5, 2024Updated 2 years ago
- Exploring prognostic indicators in pathological images of hepatocellular carcinoma based on deep learning☆45Nov 24, 2020Updated 5 years ago
- A python package for pathway visualization☆37Nov 11, 2020Updated 5 years ago