An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
☆164May 17, 2022Updated 4 years ago
Alternatives and similar repositories for EMOGI
Users that are interested in EMOGI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explainable Multilayer Graph Neural Network for Cancer Gene Prediction☆22Nov 3, 2023Updated 2 years ago
- MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network …☆12Dec 27, 2022Updated 3 years ago
- End-to-end deep learning model for low dimensional latent space extraction and multi-class classification on multi-omics datasets.☆35Jun 30, 2021Updated 5 years ago
- Multi-omics integration method using AE and GCN☆42Jul 2, 2026Updated 2 weeks ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Aug 13, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 6 years ago
- PGCN: Disease gene prioritization by disease and gene embedding through GCN☆79Apr 1, 2024Updated 2 years ago
- CGMega: dissecting cancer gene module with explainable graph attention network☆19Jul 25, 2024Updated last year
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆13Aug 7, 2025Updated 11 months ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Multi-task deep learning framework for multi-omics data analysis☆53May 5, 2022Updated 4 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆127Apr 30, 2019Updated 7 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- development of network co-localization tool☆17Mar 2, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆167Nov 15, 2021Updated 4 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆14Jul 12, 2026Updated last week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆37Oct 2, 2019Updated 6 years ago
- A deep-learning framework for multi-omics integration (RNA-seq, CNV, DNA methylation, etc.)☆32Updated this week
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15May 7, 2021Updated 5 years ago
- ☆17Feb 27, 2026Updated 4 months ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26May 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated last month
- Codebase for "Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series"☆13Nov 1, 2020Updated 5 years ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆24Sep 2, 2025Updated 10 months ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- ☆30May 15, 2025Updated last year
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedi…☆17Mar 27, 2025Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network☆102Jan 21, 2019Updated 7 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆212Jul 11, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jun 29, 2021Updated 5 years ago
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆22Sep 21, 2021Updated 4 years ago
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆17Mar 2, 2022Updated 4 years ago
- Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data☆10Jul 2, 2026Updated 2 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆35Nov 30, 2022Updated 3 years ago
- Factor Modeling for radiomics☆12Aug 29, 2025Updated 10 months ago