libCZI is an Open Source Cross-Platform C++ library to read and write CZI.
☆64Jan 30, 2026Updated last month
Alternatives and similar repositories for libczi
Users that are interested in libczi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 3 months ago
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆27Mar 16, 2026Updated last week
- ☆20May 12, 2021Updated 4 years ago
- Read Olympus image files (OIF and OIB).☆13Feb 9, 2026Updated last month
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated last month
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- StarDist plugin for ImageJ☆30May 9, 2022Updated 3 years ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆47Mar 16, 2026Updated last week
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Mistral-java-client is a client for the Mistral.ai API. It allows you to easily interact with the Mistral AI models. Currently supports a…☆11Jul 28, 2025Updated 7 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Sep 26, 2024Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 8 months ago
- ☆14Jan 26, 2021Updated 5 years ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Jun 13, 2024Updated last year
- Raw format to OME-TIFF converter☆56Mar 9, 2026Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆63Mar 6, 2026Updated 2 weeks ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆28Nov 17, 2025Updated 4 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated 10 months ago
- ☆41Updated this week
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Updated this week
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Multi-handle range slider widget for PyQt/PySide☆47Jun 28, 2021Updated 4 years ago