PreibischLab / BigStitcher
ImgLib2/BDV implementation of Stitching for large datasets
☆69Updated last week
Alternatives and similar repositories for BigStitcher:
Users that are interested in BigStitcher are comparing it to the libraries listed below
- Running compute-intense parts of BigStitcher distributed☆22Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Tools for distributed alignment of massive images☆80Updated this week
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated 2 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 3 weeks ago
- Lectures for a napari training course☆50Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last week
- ☆38Updated 2 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆61Updated 2 weeks ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆38Updated 2 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆60Updated this week
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆24Updated 2 years ago
- A napari plugin for making animations☆84Updated 5 months ago
- Browse your OMERO database from within napari.☆35Updated last week
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Dataset EXploration & Processing☆31Updated last year