yufengwudcs / ScisTreeLinks
Cell tree inference and genotype calling from noisy single cell data
☆9Updated 7 months ago
Alternatives and similar repositories for ScisTree
Users that are interested in ScisTree are comparing it to the libraries listed below
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆12Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆43Updated 2 weeks ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆12Updated 5 years ago
- ☆12Updated last year
- Algorithms for single-cell analysis☆29Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- Paired-seq☆14Updated 10 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆12Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Toolkit for single-cell copy number analysis☆23Updated 7 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago