wys8c764 / CSNLinks
Cell-specific Network Constructed by Single-cell RNA Sequencing Data
☆21Updated 6 years ago
Alternatives and similar repositories for CSN
Users that are interested in CSN are comparing it to the libraries listed below
Sorting:
- Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"☆19Updated last year
- ☆30Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆35Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆44Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 5 years ago
- ☆35Updated 9 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆11Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- ☆66Updated 3 weeks ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- The Software of UnionCom Algorithm☆25Updated 10 months ago
- ☆49Updated 10 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- Fast motif matching in R☆47Updated last year
- ☆25Updated 3 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago