Alternatives and similar repositories for SparseAssembler

Users that are interested in SparseAssembler are comparing it to the libraries listed below

• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated last year
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 3 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last month
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year
• kolikem / loma
  ☆14Updated last year
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• mchaisso / mcutils
  ☆12Updated last month
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 4 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• gramarga / ConPADE
  Contig Ploidy and Allele Dosage Estimation
  ☆10Updated 9 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 5 years ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆16Updated 7 years ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 2 weeks ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 7 months ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆31Updated 5 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆20Updated 6 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 3 months ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago