WubingZhang / MAGeCKFluteLinks
Integrative analysis pipeline for pooled CRISPR functional genetic screens
☆31Updated last year
Alternatives and similar repositories for MAGeCKFlute
Users that are interested in MAGeCKFlute are comparing it to the libraries listed below
Sorting:
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- ☆62Updated 5 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 3 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 2 weeks ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 2 months ago
- ☆66Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- A list of alternative splicing analysis resources☆46Updated 6 months ago
- Tutorial Website☆59Updated 4 years ago
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- A computational workflow for exitron splicing identification☆12Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Find circRNAs in RNA-seq data.☆15Updated 9 years ago
- ☆89Updated 3 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 7 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆50Updated 8 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year