mungpeter / RAMAplotLinks
Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory
☆11Updated 3 years ago
Alternatives and similar repositories for RAMAplot
Users that are interested in RAMAplot are comparing it to the libraries listed below
Sorting:
- For the purpose of post progressing of MD carried by gromacs☆23Updated 7 months ago
- An open-source library for the analysis of protein interactions.☆33Updated 4 years ago
- ☆22Updated 9 months ago
- Analysis of contacts in molecular dynamics trajectories☆45Updated 6 years ago
- ☆27Updated last month
- ☆15Updated 7 years ago
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Updated 11 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- ☆23Updated 4 years ago
- Python library to run structure based model (SBM) simulations using the OpenMM toolkit☆23Updated 3 weeks ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- ☆21Updated 2 years ago
- Some scripts that I keep using over and over.☆21Updated 7 months ago
- Automated construction of protein chimeras and their analysis.☆15Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 7 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- Set of useful HADDOCK utility scripts☆57Updated 4 months ago
- Contact map analysis for biomolecules; based on MDTraj☆48Updated last week
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆20Updated 11 months ago
- ☆30Updated 8 months ago
- Educational Notes on Molecular Modeling☆13Updated 5 years ago
- MEGADOCK on Google Colaboratory☆20Updated 2 years ago
- Explicit crosslinks in AlphaFold 3☆23Updated 10 months ago
- ☆11Updated 5 years ago
- Python Toolbox For Rosetta Silent Files Processing☆16Updated 6 years ago
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆16Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 8 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 3 months ago
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated 5 months ago