Alternatives and similar repositories for RAMAplot

Users that are interested in RAMAplot are comparing it to the libraries listed below

• Zuttergutao / GMXAnalysis
  For the purpose of post progressing of MD carried by gromacs
  ☆22Updated 4 months ago
• DLab / RIP-MD
  ☆15Updated 7 years ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆32Updated 3 years ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆16Updated 9 months ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆19Updated 2 years ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• JieDuTQS / PPDOCK
  ☆22Updated 6 months ago
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆44Updated 6 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 4 months ago
• mmtsb / toolset
  MMTSB Tool Set
  ☆32Updated 2 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆20Updated 3 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• strauchlab / scaffold_design
  ☆18Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• dwhswenson / contact_map
  Contact map analysis for biomolecules; based on MDTraj
  ☆46Updated 10 months ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆19Updated 9 months ago
• Faezov / PDBrenum
  ☆30Updated 6 months ago
• djmaity / md-davis
  MD DaVis: A python package to analyze molecular dynamics trajectories of proteins
  ☆16Updated 9 months ago
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated last week
• AspirinCode / iPPIGAN
  De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors
  ☆20Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 4 months ago
• ld139 / ApoDock_public
  Code for ApoDock
  ☆21Updated 7 months ago
• NRGlab / Surfaces
  ☆15Updated last month
• CompBiochBiophLab / sbm-openmm
  Python library to run structure based model (SBM) simulations using the OpenMM toolkit
  ☆23Updated 3 years ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆30Updated 2 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆55Updated 2 months ago