TUnA: Transformer-based Uncertainty Aware model for PPI Prediction
☆14Dec 21, 2025Updated 2 months ago
Alternatives and similar repositories for TUnA
Users that are interested in TUnA are comparing it to the libraries listed below
Sorting:
- SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.☆24Jan 8, 2026Updated 2 months ago
- Trying to train LoRAs for ESM-2☆12Aug 6, 2023Updated 2 years ago
- Complete saturation mutagenesis of a protein using ESM☆16Feb 20, 2024Updated 2 years ago
- Implementation of multi-output conformal regression methods☆13Sep 23, 2025Updated 5 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated 11 months ago
- Simple Python package to calculate ROC AUC with confidence intervals using DeLong’s method☆21Feb 22, 2026Updated 2 weeks ago
- ☆30Aug 27, 2025Updated 6 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- ☆17Jun 27, 2025Updated 8 months ago
- SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network☆14Nov 17, 2022Updated 3 years ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated last year
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆32Dec 10, 2025Updated 2 months ago
- Predicting Out-of-Distribution Error with the Projection Norm☆19Jul 27, 2022Updated 3 years ago
- ☆18Sep 28, 2023Updated 2 years ago
- ☆19Aug 6, 2019Updated 6 years ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 3 months ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆27Jan 8, 2024Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆62Aug 29, 2025Updated 6 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Dec 8, 2025Updated 3 months ago
- ☆81Feb 11, 2026Updated 3 weeks ago
- ☆35Feb 28, 2026Updated last week
- ☆34Jun 29, 2024Updated last year
- ☆87May 29, 2025Updated 9 months ago
- Python package built around protein structure and dynamics. OpenBabel-inspired objects.☆37May 23, 2025Updated 9 months ago
- ☆10Sep 29, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Dataset corresponding to the paper: "Form2Seq : A Framework for Higher-Order Form Structure Extraction"☆10Feb 17, 2021Updated 5 years ago
- rebuilds and completes models of protein complexes using AlphaFold2☆16Feb 26, 2026Updated last week
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- ☆11Feb 27, 2026Updated last week
- R Package for Bootstrap Unit Root Tests☆10May 5, 2025Updated 10 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆101Jan 11, 2025Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Source code repository for the AISTAT 2023 paper Transport Reversible Jump Proposals.☆10Mar 3, 2023Updated 3 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- Public version for DistPepFold☆10Jul 17, 2025Updated 7 months ago
- ☆10Jun 24, 2023Updated 2 years ago