Alternatives and similar repositories for AiCE

Users that are interested in AiCE are comparing it to the libraries listed below

• zchwang / CataPro
  A generalized enzyme kinetics parameter prediction model.
  ☆71Updated 2 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆67Updated 3 months ago
• Luo-SynBioLab / UniKP
  ☆87Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆84Updated this week
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆127Updated 2 weeks ago
• westlake-repl / SaprotHub
  Making Protein Language Modeling Accessible to All Biologists
  ☆138Updated last week
• AlexanderKroll / ESP
  ☆75Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆66Updated last year
• Jfeldman34 / AF3Complex
  ☆51Updated 5 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆164Updated 8 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆103Updated last week
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆102Updated this week
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• ai4protein / Pro-Prime
  ☆74Updated 3 months ago
• biomed-AI / GraphEC
  ☆45Updated 3 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• ikalvet / heme_binder_diffusion
  ☆142Updated 4 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆149Updated 7 months ago
• RP3Net / RP3Net
  ☆13Updated 6 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆104Updated 2 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆64Updated 8 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆74Updated last month
• zhanghaicang / carbonmatrix_public
  ☆118Updated 6 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆134Updated 3 years ago
• jkwang93 / AMP-Designer
  A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery
  ☆44Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆92Updated last month
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆102Updated 3 weeks ago
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆93Updated this week