ahmedmoustafa / bioinformatics-toolboxLinks
Docker container for bioinformatics tools and pipelines
☆15Updated 10 months ago
Alternatives and similar repositories for bioinformatics-toolbox
Users that are interested in bioinformatics-toolbox are comparing it to the libraries listed below
Sorting:
- Short lessons from FAS Informatics coffee hour☆152Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆218Updated last week
- Download FASTQ files from SRA or ENA repositories.☆342Updated 2 months ago
- ☆273Updated 9 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆433Updated 8 months ago
- Bioinformatics Workbook repository☆191Updated last week
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated this week
- RNA-seq workflow using STAR and DESeq2☆345Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆186Updated 4 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago
- minimal example implementations for bioinformatics workflow managers☆279Updated 3 years ago
- Documentation for the ANNOVAR software☆245Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆339Updated last week
- Web application to explore the Sequence Read Archive.☆218Updated last month
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Nextflow training material☆188Updated 3 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated last year
- Genome-scale protein function classification☆343Updated 3 weeks ago
- ☆205Updated 3 weeks ago
- R package for DNA methylation analysis☆234Updated 6 months ago
- Step-by-step analysis pipeline for RNA-seq data☆140Updated 2 years ago
- Bioinformatics one liners from Ming Tang☆492Updated 4 years ago
- Introduction to bulk RNA-seq☆120Updated 4 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆240Updated last month
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆381Updated 2 months ago
- ☆154Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆142Updated 10 years ago