ahmedmoustafa / bioinformatics-toolboxLinks
Docker container for bioinformatics tools and pipelines
☆15Updated last year
Alternatives and similar repositories for bioinformatics-toolbox
Users that are interested in bioinformatics-toolbox are comparing it to the libraries listed below
Sorting:
- Web application to explore the Sequence Read Archive.☆217Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Bioinformatics Workbook repository☆193Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last month
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆193Updated 4 years ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Short lessons from FAS Informatics coffee hour☆152Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆348Updated 4 months ago
- Tool for plotting sequencing data along genomic coordinates.☆319Updated 4 months ago
- ☆276Updated last week
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆183Updated 2 weeks ago
- ☆156Updated 3 years ago
- R package for DNA methylation analysis☆239Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆219Updated 3 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆443Updated 10 months ago
- Introduction to bulk RNA-seq☆123Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆245Updated 3 months ago
- Application for making ENCODE Blacklists☆327Updated 4 years ago
- Documentation for the ANNOVAR software☆245Updated 3 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆172Updated 4 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆344Updated last week
- Full-Length Alternative Isoform analysis of RNA☆237Updated this week
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆278Updated 2 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆248Updated last month
- Windowed Adaptive Trimming for fastq files using quality☆225Updated 8 years ago
- website for the rnaseq course☆110Updated this week
- Step-by-step analysis pipeline for RNA-seq data☆147Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆240Updated last week
- AWS for Bioinformatics Researchers☆181Updated 3 months ago