Alternatives and similar repositories for scRNAIdent

Users that are interested in scRNAIdent are comparing it to the libraries listed below

• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 weeks ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆14Updated 6 months ago
• theislab / cellrank_reproducibility
  CellRank's reproducibility repository.
  ☆15Updated 3 years ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• reyes-m / sepsis_signature
  ☆12Updated 5 years ago
• jinworks / scAB
  scAB detects multiresolution cell states with clinical significance
  ☆17Updated 2 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆31Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 3 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• JSB-UCLA / scPNMF
  ☆13Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• saeyslab / brainimmuneatlas
  Overview of the scripts used to analyse the brainimmuneatlas data
  ☆19Updated 4 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆22Updated 2 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆34Updated 2 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• MSZaki / Aging-and-CR-rat-atlas
  Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…
  ☆29Updated 5 years ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆18Updated 4 years ago
• bischofp / single_cell_lung_adenocarcinoma
  ☆31Updated 3 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆14Updated 2 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆21Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 6 months ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• UCSF-DSCOLAB / pan_cancer_immune_archetypes
  ☆12Updated 2 months ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆35Updated last year