LivecellX is a comprehensive single-cell oriented deep learning live-cell analysis framework written in Python, designed specifically for segmenting, tracking, extracting features and analyzing single-cell trajectories in live-cell 2D/3D imaging datasets.
☆16Dec 10, 2025Updated 9 months ago
Alternatives and similar repositories for livecellx
Users that are interested in livecellx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pycalibrate is a Python library to visually analyze model calibration in Jupyter Notebooks☆17Jul 2, 2022Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- Inferring multi-modality dynamics for single cell genomics data☆15Dec 18, 2025Updated 9 months ago
- STED simulation platform written in Python☆19Oct 4, 2024Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated 2 years ago
- Bits and pieces for the carpentries workshops☆17May 24, 2026Updated 3 months ago
- A toolbox for analysing and simulating Image Scanning Microscopy (ISM) datasets.☆20Jul 23, 2026Updated last month
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated 2 years ago
- Deblurring/blurring, adding/removing noise, detecting blur from images in Python.☆18Mar 4, 2018Updated 8 years ago
- ☆12Aug 18, 2021Updated 5 years ago
- A python package for calculating local cell specific networks☆18Nov 17, 2023Updated 2 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Add tooltip to your obsidian canvas's nodes and navigate between nodes☆16Jun 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Updated this week
- PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics☆22May 8, 2024Updated 2 years ago
- slint-yolov8-demo☆12Dec 9, 2023Updated 2 years ago
- Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction☆21Oct 20, 2023Updated 2 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- ☆213Jun 29, 2023Updated 3 years ago
- This is a plugin for obsidian. The Goal of this plugin is making Obsidian canvas easier to edit. (inspired by heptabase)☆14Sep 29, 2023Updated 2 years ago
- AutoTag-YOLOv8 is an object detection project that uses the YOLOv8 model and leverages the power of SAM and DINGO models for automatic la…☆13May 3, 2023Updated 3 years ago
- A Julia package for reconstructing the vector field components; potential, divergence, curl and Jacobian matrix in a data manifold (appro…☆20Jun 23, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CopyBench: Measuring Literal and Non-Literal Reproduction of Copyright-Protected Text in Language Model Generation☆14Aug 19, 2025Updated last year
- ☆13Oct 24, 2021Updated 4 years ago
- Tutorials on using latest dynamo package☆27Jul 1, 2026Updated 2 months ago
- ☆18Jun 15, 2023Updated 3 years ago
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 6 months ago
- ☆12Feb 29, 2020Updated 6 years ago
- A rust script to convert a better bibtex json file from Zotero into nice organised notes in Obsidian☆13Nov 3, 2021Updated 4 years ago
- Scripts☆10Jun 29, 2016Updated 10 years ago
- hugo static site generator for website 3.0; a superset of quartz optimised for an Obsidian vault with preprocessing and postprocessing sc…☆10Aug 4, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- A node screenshot plugin for Canvas in Obsidian.☆10Updated this week
- ☆11Oct 21, 2023Updated 2 years ago
- ☆13Jul 2, 2024Updated 2 years ago
- The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analy…☆12Sep 7, 2023Updated 3 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- Code repository for the UDCT project☆22Mar 22, 2019Updated 7 years ago