menghaowei / ngstoolsLinks
My own tools code for NGS data analysis (Next Generation Sequencing)
☆30Updated 6 years ago
Alternatives and similar repositories for ngstools
Users that are interested in ngstools are comparing it to the libraries listed below
Sorting:
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- Create KEGG.db Package☆61Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆51Updated last month
- Transcriptomics Visualization R package.☆74Updated 5 months ago
- documentation for trackViewer☆29Updated 6 years ago
- ☆50Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated 3 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- ☆29Updated 6 years ago
- Demultiplexes a fastq.☆47Updated 4 years ago
- ☆32Updated 7 years ago
- Tutorial Website☆59Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- DNA methylation analysis notes from Ming Tang☆87Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Motif manipulation functions for R.☆30Updated 4 months ago
- ☆38Updated 4 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 months ago
- GENome Organisation Visual Analytics☆80Updated 8 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- DEG analysis and KEGG/GO enrichment analysis☆69Updated 7 years ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Extract Sequence from Genome According to Annotation File☆37Updated 5 months ago