menghaowei / ngstools
My own tools code for NGS data analysis (Next Generation Sequencing)
☆29Updated 5 years ago
Alternatives and similar repositories for ngstools:
Users that are interested in ngstools are comparing it to the libraries listed below
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Create KEGG.db Package☆60Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- documentation for trackViewer☆29Updated 5 years ago
- ☆50Updated 6 years ago
- ATAC-seq processing pipeline☆32Updated 3 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆49Updated 2 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated 2 weeks ago
- Tutorial Website☆57Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆47Updated 6 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- ☆32Updated 7 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Pipeline for Cut&Tag analysis☆19Updated 2 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Some NGS workflow created by snakemake☆13Updated 2 months ago
- Transcriptomics Visualization R package.☆71Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago