Pipeline for analysing data from whole-exome sequencing (WES) of circulating tumour DNA (ctDNA)
☆12Feb 3, 2018Updated 8 years ago
Alternatives and similar repositories for ctDNA_WES_pipeline
Users that are interested in ctDNA_WES_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Aug 22, 2021Updated 5 years ago
- Circular binary segmentation algorithm for copy number data☆12Oct 8, 2023Updated 3 years ago
- workflow to analysis of whole-exome-sequencing☆14Feb 12, 2020Updated 6 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 9 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline creation tool using Snakemake☆14Updated this week
- BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read☆12Jun 17, 2020Updated 6 years ago
- Code for USTC's C Programming course☆14Sep 30, 2020Updated 6 years ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆26Oct 30, 2025Updated last year
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 6 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 9 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- barcode demultiplexing☆22Jun 4, 2019Updated 7 years ago
- ☆44Feb 9, 2024Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆64Jul 27, 2026Updated 3 months ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- Model files for Sentieon variant callers☆17Oct 31, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline used for de novo genome assembly @CNAG☆11Jul 22, 2026Updated 3 months ago
- ☆10Jan 23, 2021Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- QDNAseq package for Bioconductor☆57Jul 27, 2024Updated 2 years ago
- ☆10Sep 14, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 7 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 11 months ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago
- PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its …☆11Dec 4, 2025Updated 11 months ago
- 16s Qiime2 pipeline☆17Sep 26, 2018Updated 8 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
Are these results useful?