Git repository for FASTA36 sequence comparison software
☆129Nov 13, 2025Updated 5 months ago
Alternatives and similar repositories for fasta36
Users that are interested in fasta36 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- haplotypic duplication identification tool☆283Oct 30, 2025Updated 6 months ago
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆138Sep 16, 2024Updated last year
- ☆29Mar 16, 2023Updated 3 years ago
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆55Updated this week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 8 months ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Jun 4, 2024Updated last year
- Uses cDBG to count unitigs in bacterial populations☆16Feb 15, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Align proteins to genomes with splicing and frameshift☆400Jan 5, 2026Updated 3 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆248Apr 15, 2026Updated 2 weeks ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆71Oct 16, 2023Updated 2 years ago
- HMMER: biological sequence analysis using profile HMMs☆408Feb 16, 2026Updated 2 months ago
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- Build a partitioned pangenome graph from microbial genomes☆298Apr 20, 2026Updated last week
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- the pangenome graph builder☆492Mar 31, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- ☆22Apr 2, 2015Updated 11 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆673Updated this week
- programs and scripts for molecular structure analysis☆11Mar 26, 2026Updated last month
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆244Mar 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Plant small RNA target prediction tool☆27Dec 19, 2016Updated 9 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 8 months ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year