neufeld / pandaseqView external linksLinks
PAired-eND Assembler for DNA sequences
☆137Dec 21, 2020Updated 5 years ago
Alternatives and similar repositories for pandaseq
Users that are interested in pandaseq are comparing it to the libraries listed below
Sorting:
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆146Oct 4, 2016Updated 9 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆23Sep 2, 2016Updated 9 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated 8 months ago
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 2 months ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Pair-End AssembeR☆34Apr 16, 2014Updated 11 years ago
- Versatile open-source tool for microbiome analysis☆737Jan 19, 2026Updated 3 weeks ago
- A sequence demultiplexer for the Illumina HiSeq technology☆21Apr 29, 2013Updated 12 years ago
- de novo sequence assembler using string graphs☆243Aug 8, 2019Updated 6 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jan 5, 2026Updated last month
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 6 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 2 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 9 months ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 13 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 6 years ago
- Interactively explore metagenomes and more from a web browser.☆493Dec 22, 2021Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 5 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆295Oct 13, 2025Updated 4 months ago
- A message queue for genomic surveillance☆19Oct 14, 2021Updated 4 years ago
- ☆96Sep 21, 2022Updated 3 years ago
- ☆16Aug 8, 2025Updated 6 months ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Jan 31, 2026Updated 2 weeks ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆276Jan 13, 2026Updated last month
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆94Nov 20, 2017Updated 8 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week