neufeld / pandaseqLinks
PAired-eND Assembler for DNA sequences
☆136Updated 4 years ago
Alternatives and similar repositories for pandaseq
Users that are interested in pandaseq are comparing it to the libraries listed below
Sorting:
- Windowed Adaptive Trimming for fastq files using quality☆224Updated 8 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆242Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 9 years ago
- Practical, reusable scripts for bioinformatics☆102Updated 6 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Updated 4 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- A robust, extensible metagenomics pipeline☆174Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆142Updated 7 years ago
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago
- Trinotate source code☆83Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated last month
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated 4 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆217Updated 2 months ago
- FASTA/FASTQ pre-processing programs☆190Updated 3 years ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆181Updated 2 months ago
- 🐞 Convert NCBI taxonomy dump into lineages☆149Updated last week
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆127Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- A tool to circularize genome assemblies☆247Updated last year