neufeld / pandaseq

Related projects ⓘ

Alternatives and complementary repositories for pandaseq

• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆97Updated 5 years ago
• jstjohn / SeqPrep
  Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
  ☆141Updated 8 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆283Updated 3 weeks ago
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆81Updated 6 years ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆109Updated last year
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆207Updated 11 months ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆205Updated 4 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆125Updated 2 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆192Updated 3 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆127Updated 2 years ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆111Updated 2 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆145Updated last month
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆127Updated 9 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆140Updated 2 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆149Updated 3 weeks ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆253Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆213Updated 3 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆276Updated last month
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆178Updated this week
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆226Updated last year
• jtlovell / GENESPACE
  ☆191Updated 3 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆194Updated 3 weeks ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆233Updated 7 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆142Updated 5 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆202Updated 11 months ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆167Updated 3 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆136Updated 8 months ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆113Updated 8 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆308Updated 5 months ago
• alyssafrazee / ballgown
  Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
  ☆142Updated 3 years ago