A generalised, dynamic DNA reference library for metabarcoding of fishes
☆18Jan 23, 2026Updated last month
Alternatives and similar repositories for meta-fish-lib
Users that are interested in meta-fish-lib are comparing it to the libraries listed below
Sorting:
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 3 months ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 7 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- ☆13Feb 22, 2024Updated 2 years ago
- Analysis and visualisation of ecological communities in R☆19Feb 25, 2026Updated last week
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆20Jan 8, 2024Updated 2 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- ☆22Feb 23, 2023Updated 3 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 2 months ago
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated last month
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 4 months ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11Aug 15, 2025Updated 6 months ago
- ☆10Feb 21, 2020Updated 6 years ago
- R package for Ecological Networks utility functions and metrics☆10Dec 18, 2025Updated 2 months ago
- ☆13Jun 1, 2021Updated 4 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 3 months ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- fork的一个repo，我主要用来放解决 Fcitx 在 RStudio 中中文输入的问题 lib 文件☆14Feb 20, 2026Updated last week
- Hitting associations with k-mers☆44May 14, 2022Updated 3 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- ☆14Nov 4, 2024Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Dec 22, 2025Updated 2 months ago
- ☆14Apr 30, 2020Updated 5 years ago
- ☆12Jul 14, 2021Updated 4 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- R package and web app for spatial visualisation of admixture on a projected map☆46Apr 3, 2025Updated 11 months ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 6 months ago
- A transformer model for DNA barcode representation learning and taxonomic classification.☆16Feb 23, 2026Updated last week
- Command line tool for Wave containers provisioning service☆19Dec 17, 2025Updated 2 months ago