genner-lab / meta-fish-libLinks
A generalised, dynamic DNA reference library for metabarcoding of fishes
☆18Updated 2 weeks ago
Alternatives and similar repositories for meta-fish-lib
Users that are interested in meta-fish-lib are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Updated 2 months ago
- ☆53Updated 5 years ago
- Sydney Phylogenetics Workshop☆68Updated 7 months ago
- ☆78Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆94Updated 2 months ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆50Updated 4 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Updated 3 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33Updated 2 years ago
- ARGpore2☆13Updated last year
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆76Updated last year
- Using ggtree to build phylogenetic trees☆50Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated this week
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- ☆13Updated last year
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 9 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆96Updated last year
- GraftM - Rapid community profiles from metagenomes☆48Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- EukRef curation pipeline☆13Updated 4 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- SourceTracker2☆85Updated last year