A generalised, dynamic DNA reference library for metabarcoding of fishes
☆18Mar 17, 2026Updated last week
Alternatives and similar repositories for meta-fish-lib
Users that are interested in meta-fish-lib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 4 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- Analysis and visualisation of ecological communities in R☆19Feb 25, 2026Updated 3 weeks ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- ☆13Feb 22, 2024Updated 2 years ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 8 months ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆20Jan 8, 2024Updated 2 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- ☆14Apr 30, 2020Updated 5 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆15Mar 6, 2026Updated 2 weeks ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated 2 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 3 months ago
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 5 months ago
- Python implementation of the BCALM algorithm☆15Dec 2, 2016Updated 9 years ago
- ☆23Feb 23, 2023Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 3 months ago
- R package to find species interactions from co-occurrence data☆16Feb 27, 2024Updated 2 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆20Feb 22, 2018Updated 8 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- A Python library for interacting with ENA's API☆25Aug 10, 2021Updated 4 years ago
- fork的一个repo，我主要用来放解决 Fcitx 在 RStudio 中中文输入的问题 lib 文件☆14Feb 20, 2026Updated last month
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- Introductory lesson to generate range maps for butterfly-host plant interactions and predict distributional shifts using publicly availab…☆18Aug 8, 2024Updated last year
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 7 years ago
- Non-parametric, asymptotic P-value computation for multivariate linear models☆16Oct 16, 2023Updated 2 years ago
- R package and web app for spatial visualisation of admixture on a projected map☆46Apr 3, 2025Updated 11 months ago
- Hitting associations with k-mers☆44May 14, 2022Updated 3 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- A Landscape Genomic Analysis Toolkit in R☆22Nov 18, 2025Updated 4 months ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated 2 weeks ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 8 years ago