Alternatives and similar repositories for bold:

Users that are interested in bold are comparing it to the libraries listed below

• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆23Updated 3 years ago
• heibl / ips
  R Interfaces to Phylogenetic Software
  ☆11Updated this week
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last year
• shaunpwilkinson / insect
  Informatic Sequence Classification Trees
  ☆14Updated 3 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆20Updated last year
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 3 years ago
• skembel / picante
  R tools for integrating phylogenies and ecology
  ☆34Updated last year
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆72Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• pbuttigieg / masame
  Code to run the shiny functions for the MASAME suite
  ☆28Updated 5 years ago
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆21Updated 2 years ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆18Updated 4 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 10 months ago
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆23Updated 7 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last year
• JoeyBernhardt / NumericalEcology
  code for Numerical Ecology with R
  ☆35Updated 6 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆14Updated 2 weeks ago
• adrientaudiere / MiscMetabar
  R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
  ☆17Updated this week
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆44Updated this week
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆49Updated last week
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 9 months ago
• wtesto / SpeciesOccurrenceMapping
  Species occurrence dot maps in R
  ☆21Updated 2 years ago
• HullUni-bioinformatics / metaBEAT
  Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
  ☆19Updated 5 years ago
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆20Updated 2 years ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 3 months ago
• daijiang / hillR
  An R pakage to calculate diversity through Hill Numbers
  ☆33Updated 9 months ago
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago