Alternatives and similar repositories for bold

Users that are interested in bold are comparing it to the libraries listed below

• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆144Updated 8 months ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 3 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆37Updated 3 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆78Updated 2 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 7 months ago
• skembel / picante
  R tools for integrating phylogenies and ecology
  ☆35Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 2 months ago
• traitecoevo / fungaltraits
  A dynamic database of fungal trait measurements
  ☆77Updated 5 years ago
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆23Updated 2 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 2 months ago
• DominikBuchner / BOLDigger
  A python package to query different databases of boldsystems.org
  ☆32Updated 11 months ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated this week
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆22Updated 6 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last month
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆46Updated last week
• bensutherland / eDNA_metabarcoding
  Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
  ☆12Updated 3 years ago
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆103Updated 5 months ago
• molbiodiv / meta-barcoding-dual-indexing
  Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods
  ☆10Updated 3 years ago
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• dkahle / TITAN2
  Threshold Indicator Taxa Analysis
  ☆16Updated last year
• heibl / ips
  R Interfaces to Phylogenetic Software
  ☆12Updated 3 weeks ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆34Updated 5 years ago
• liamrevell / phytools
  ☆224Updated 3 weeks ago
• phylocom / phylocom
  Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic
  ☆43Updated 2 years ago
• pbuttigieg / masame
  Code to run the shiny functions for the MASAME suite
  ☆28Updated 5 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆16Updated 2 months ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated 2 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆69Updated last month
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆72Updated 4 months ago