Alternatives and similar repositories for bold

Users that are interested in bold are comparing it to the libraries listed below

• DominikBuchner / BOLDigger
  A python package to query different databases of boldsystems.org
  ☆31Updated 10 months ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 3 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆37Updated 3 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 3 weeks ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 5 months ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated this week
• pbuttigieg / masame
  Code to run the shiny functions for the MASAME suite
  ☆28Updated 5 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last week
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆143Updated 6 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆84Updated last month
• traitecoevo / fungaltraits
  A dynamic database of fungal trait measurements
  ☆77Updated 5 years ago
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆23Updated last month
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆103Updated 4 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated 2 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆78Updated 2 years ago
• liamrevell / phytools
  ☆223Updated last month
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated last week
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆16Updated last month
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 5 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆45Updated 2 years ago
• shaunpwilkinson / insect
  Informatic Sequence Classification Trees
  ☆14Updated 3 months ago
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated 2 years ago
• HullUni-bioinformatics / metaBEAT
  Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
  ☆19Updated 6 years ago
• heibl / ips
  R Interfaces to Phylogenetic Software
  ☆12Updated 6 months ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆22Updated 5 months ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated last month
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆88Updated 4 years ago