Alternatives and similar repositories for Slurmer

Users that are interested in Slurmer are comparing it to the libraries listed below

• Rbfinch / grepq
  quickly filter fastq files by matching sequences to a set of regex patterns
  ☆54Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated this week
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 3 weeks ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆69Updated 2 months ago
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆51Updated this week
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆22Updated this week
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 5 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 5 months ago
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆137Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 3 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆43Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated last week
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆70Updated 3 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated 3 weeks ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated 3 weeks ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆26Updated 2 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆56Updated 2 weeks ago
• flalom / vcf-reformatter
  🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …
  ☆36Updated 2 weeks ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 4 months ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆16Updated last month
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆18Updated 2 months ago
• sharkLoc / rust-in-bioinformatics
  A collection of genomics software tools written in Rust
  ☆63Updated last week
• chfi / waragraph
  ☆28Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 2 months ago
• wdecoster / kyber
  ☆21Updated 7 months ago