Visualize 3D ST data in Jupyter
☆26Aug 21, 2026Updated last month
Alternatives and similar repositories for spatial-vista-py
Users that are interested in spatial-vista-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆42Apr 16, 2026Updated 5 months ago
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆11Aug 13, 2026Updated last month
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆18Aug 6, 2026Updated 2 months ago
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆23May 4, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The analysis of the 1KCP☆17Dec 3, 2025Updated 10 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Sep 26, 2024Updated 2 years ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 11 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated last month
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆46Feb 20, 2025Updated last year
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆23Dec 2, 2025Updated 10 months ago
- ☆22Jul 21, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phased structural variant discovery in pangenomes☆43Sep 18, 2026Updated 3 weeks ago
- Code and example of the D-SPIN framework☆43Aug 5, 2026Updated 2 months ago
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆223Updated this week
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 5 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated last year
- my personal blog by astro☆25Mar 26, 2025Updated last year
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python package for creating UpSet plots using Plotly☆34Mar 11, 2024Updated 2 years ago
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- ☆50Oct 2, 2026Updated last week
- Optimized sequence graph implementations for graph genomics☆36Updated this week
- ☆18Sep 30, 2026Updated last week
- ☆13May 1, 2025Updated last year
- General purpose utility related to GAF files☆38Aug 6, 2026Updated 2 months ago
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆18Sep 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆26Jan 31, 2026Updated 8 months ago
- Open Human Genome Library☆70Dec 22, 2025Updated 9 months ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 8 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Assessing enrichment of complex disease or trait associations among QTLs☆16Jun 15, 2020Updated 6 years ago