wheretrue / biobear
Work with bioinformatic files using Arrow, Polars, and/or DuckDB
☆156Updated last week
Related projects: ⓘ
- Command line scientific data management tool☆205Updated last month
- A tool to create visual HTML reports from collections of CSV/TSV tables☆87Updated this week
- Example genomics data for tool developers☆93Updated 2 months ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆85Updated last week
- Scalable genetics toolkit☆227Updated this week
- The D4 Quantitative Data Format☆153Updated 3 weeks ago
- A declarative interactive genomics visualization library for Python.☆207Updated 3 months ago
- Read specialized NGS formats as data frames in R, Python, and more.☆58Updated 2 months ago
- Monitor computational workflows in real time☆65Updated 3 months ago
- using all the bits for echt rapid variant annotation and filtering☆138Updated last month
- Python wrapper around Nextflow.☆53Updated 10 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆93Updated 3 months ago
- minimal example implementations for bioinformatics workflow managers☆259Updated 2 years ago
- Genomic interval operations on Pandas DataFrames☆171Updated this week
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆298Updated this week
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆127Updated 3 weeks ago
- WebAssembly modules for genomics☆210Updated 3 weeks ago
- Extension for Jupyter which integrates igv.js☆154Updated last year
- ☆46Updated 2 years ago
- Documentation of the Snakemake-Workflows project☆152Updated 2 years ago
- Grep for FASTQ files☆90Updated 6 months ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆47Updated last week
- Jupyter notebook based genomic data visualization toolkit.☆224Updated 2 months ago
- Per-base per-nucleotide depth analysis☆116Updated last month
- Fast FASTX parsing and k-mer methods in Rust☆173Updated 4 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆124Updated 6 months ago
- This is the development home of the Snakemake wrapper repository, see☆213Updated this week
- Python bindings for the parasail C library.☆90Updated 2 weeks ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆241Updated 4 years ago
- Fasten toolkit, for streaming operations on fastq files☆76Updated 6 months ago