Alternatives and similar repositories for biobear

Users that are interested in biobear are comparing it to the libraries listed below

• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆144Updated this week
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆101Updated 3 weeks ago
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆266Updated last month
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆229Updated last month
• vsbuffalo / scidataflow
  Command line scientific data management tool
  ☆228Updated last year
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆99Updated this week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated 3 weeks ago
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆78Updated last month
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆183Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆107Updated last month
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 2 months ago
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• wheretrue / exon
  Exon is an OLAP query engine specifically for biology and life science applications.
  ☆70Updated 7 months ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆199Updated last week
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆168Updated 6 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆61Updated 3 weeks ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 9 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆304Updated 3 weeks ago
• stjude-rust-labs / sprocket
  A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
  ☆99Updated last week
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆146Updated 2 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated this week
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆92Updated last month
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆152Updated 8 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆248Updated last week
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆140Updated 2 months ago