Alternatives and similar repositories for biobear

Users that are interested in biobear are comparing it to the libraries listed below

• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆135Updated 3 weeks ago
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆147Updated 2 weeks ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆232Updated last month
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆271Updated 3 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆86Updated 2 weeks ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆65Updated last month
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆61Updated 2 months ago
• wheretrue / exon
  Exon is an OLAP query engine specifically for biology and life science applications.
  ☆71Updated 9 months ago
• vsbuffalo / scidataflow
  Command line scientific data management tool
  ☆230Updated last year
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆99Updated 3 weeks ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 3 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 10 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆110Updated 2 months ago
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• cademirch / snkmt
  A TUI for monitoring Snakemake workflows in real-time.
  ☆46Updated 2 weeks ago
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆185Updated last month
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆202Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆48Updated last week
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆145Updated 2 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆169Updated last month
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 3 years ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆139Updated 3 weeks ago
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆181Updated 3 weeks ago
• sib-swiss / statistics-and-machine-learning-training
  ☆29Updated 3 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆95Updated 2 weeks ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆42Updated 7 months ago