A collection of genomics software tools written in Rust
☆115Apr 29, 2026Updated last week
Alternatives and similar repositories for rust-in-bioinformatics
Users that are interested in rust-in-bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioinformatics toolkit in rust☆105Feb 15, 2026Updated 2 months ago
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 3 weeks ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- Randomly subsample sequencing reads or alignments☆261Apr 28, 2026Updated last week
- Remove human reads from a sequencing run☆48Apr 27, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Development repo for pyani-plus (the next iteration of pyani)☆33May 1, 2026Updated last week
- ☆16Jun 2, 2021Updated 4 years ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 4 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 9 months ago
- Efficient, parallel compression for terabyte-scale data☆63Feb 25, 2026Updated 2 months ago
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated last month
- ☆10Jun 9, 2025Updated 10 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆154Mar 25, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- Fast sequence distance estimates☆28Apr 27, 2026Updated last week
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated last year
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 8 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Short Tandem Repeat disease loci resource☆29Updated this week
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 10 months ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 4 months ago
- Command line utility for manipulating FASTQ files☆94Apr 14, 2026Updated 3 weeks ago
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 5 months ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated last month
- ☆27Jan 30, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Primer Design Library☆14Mar 27, 2026Updated last month
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- ☆18Apr 18, 2026Updated 2 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated last week
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated last year
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆26Jan 25, 2025Updated last year