A collection of genomics software tools written in Rust
☆126Jun 9, 2026Updated last week
Alternatives and similar repositories for rust-in-bioinformatics
Users that are interested in rust-in-bioinformatics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 2 months ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆13Updated this week
- Randomly subsample sequencing reads or alignments☆268Jun 8, 2026Updated last week
- Remove human reads from a sequencing run☆48Jun 8, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Development repo for pyani-plus (the next iteration of pyani)☆33Jun 9, 2026Updated last week
- ☆16Jun 2, 2021Updated 5 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 10 months ago
- Efficient, parallel compression for terabyte-scale data☆63Feb 25, 2026Updated 3 months ago
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 3 months ago
- ☆10Jun 9, 2025Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆161Mar 25, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- Efficient querying of biological databases☆44Oct 27, 2025Updated 7 months ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- Draw the Gene structure based on the GFF and gene's ID☆10Jun 13, 2020Updated 6 years ago
- Fast sequence distance estimates☆29May 29, 2026Updated 2 weeks ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated last year
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- Read alignment statistics for metagenomics☆399Jun 11, 2026Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Short Tandem Repeat disease loci resource☆29Jun 12, 2026Updated last week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated 11 months ago
- Python2.7教程☆12Mar 2, 2018Updated 8 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 5 months ago
- Command line utility for manipulating FASTQ files☆96Apr 14, 2026Updated 2 months ago
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 2 months ago
- ☆27Jan 30, 2025Updated last year
- Python Primer Design Library☆14Mar 27, 2026Updated 2 months ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- ☆18Apr 18, 2026Updated 2 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated last month