sharkLoc / rust-in-bioinformatics
A collection of genomics software tools written in Rust
☆22Updated this week
Alternatives and similar repositories for rust-in-bioinformatics:
Users that are interested in rust-in-bioinformatics are comparing it to the libraries listed below
- expressions on VCFs☆79Updated last month
- Creating alignment plots from bam files☆56Updated last week
- bioinformatics toolkit in rust☆87Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆60Updated 2 weeks ago
- Single-cell analysis methods in Rust☆21Updated 4 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆55Updated last year
- gia: Genomic Interval Arithmetic☆61Updated 7 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆58Updated 6 months ago
- Nail is an Alignment Inference tooL☆45Updated this week
- an API for intersections of genomic data☆75Updated last week
- ☆21Updated 2 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 7 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 2 months ago
- bedtools-like functionality for interval sets in rust☆51Updated 7 months ago
- long read RNA-seq quantification☆79Updated this week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 2 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆102Updated 10 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆35Updated last week
- a lexicographically-based GTF/GFF sorter☆32Updated 7 months ago
- A quality control tool for FASTQ files written in rust☆48Updated 7 months ago
- A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas☆40Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆23Updated last year
- ☆58Updated 2 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆49Updated this week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆22Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆81Updated 4 months ago
- quickly filter fastq files by matching sequences to a set of regex patterns☆49Updated this week
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 4 months ago