pluskal-lab / DreaMS
DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)
☆31Updated last month
Alternatives and similar repositories for DreaMS
Users that are interested in DreaMS are comparing it to the libraries listed below
Sorting:
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆55Updated 11 months ago
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆69Updated last week
- Predicting tandem mass spectra from molecules☆91Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆26Updated last year
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆31Updated 2 weeks ago
- Predicting MS1 precursor chemical formula from MS/MS data☆19Updated last year
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆60Updated 2 months ago
- ☆18Updated last year
- ☆67Updated last month
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆18Updated 7 months ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆86Updated 8 months ago
- ☆23Updated last year
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆18Updated last month
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆23Updated last year
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆30Updated last month
- ☆16Updated 3 weeks ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆22Updated this week
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆70Updated 8 months ago
- COCONUT (COlleCtion of Open Natural prodUcTs): A comprehensive platform facilitating natural product research by providing data, tools, a…☆26Updated this week
- A python client for the ClassyFire API☆16Updated 5 years ago
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆21Updated 2 years ago
- ☆31Updated 5 months ago
- ☆17Updated last month
- Novana is a cheminformatics tool that extends the decomposition of molecules into Bemis-Murcko frameworks.☆52Updated 2 months ago
- Graph variational encoders for drug engineering and potentiation☆29Updated last year
- ☆23Updated 7 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆27Updated 3 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆65Updated last month
- Predicting glycan structure from LC-MS/MS data☆25Updated last month
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year