pluskal-lab / DreaMSLinks
Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)
☆144Updated this week
Alternatives and similar repositories for DreaMS
Users that are interested in DreaMS are comparing it to the libraries listed below
Sorting:
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆108Updated last month
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆72Updated last year
- Tandem Mass Spectrum Prediction with Graph Transformers☆96Updated last year
- Predicting tandem mass spectra from molecules☆125Updated last month
- open source code for Tencent tFold☆137Updated 9 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Updated last month
- ☆54Updated last year
- ☆37Updated 2 years ago
- ☆72Updated last year
- Recursion's molecular foundation model☆65Updated 7 months ago
- Official Implementation of IgGM☆176Updated last month
- Masif seed paper repository☆169Updated 3 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆108Updated 2 months ago
- Protein Structure Analysis☆63Updated 3 months ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆22Updated 3 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆161Updated last month
- ☆84Updated 7 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆130Updated 2 months ago
- Transformer Based Language Model for Peptide Property Prediction☆48Updated last year
- TEIM: TCR-Epitope Interaction Modeling☆55Updated 2 years ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆79Updated 2 months ago
- ☆65Updated 3 years ago
- A novel graph neural network strategy with the Vina distance optimization terms to predict protein-ligand binding affinity☆31Updated last year
- Top open source software from the top 50 pharmaceutical companies☆70Updated last year
- An accurate and trainable end-to-end protein-ligand docking framework☆119Updated 9 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆114Updated 5 months ago
- ☆74Updated 5 years ago
- Sandbox for Deep-Learning based Computational Protein Design☆120Updated last month
- AlphaFold-initiated replica exchange protein docking☆87Updated 7 months ago