Alternatives and similar repositories for DreaMS

Users that are interested in DreaMS are comparing it to the libraries listed below

• Roestlab / massformer
  Tandem Mass Spectrum Prediction with Graph Transformers
  ☆99Updated last year
• pluskal-lab / MassSpecGym
  MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)
  ☆112Updated 2 months ago
• samgoldman97 / mist
  Encoding MS/MS spectra using formula transformers for inferring molecular properties
  ☆72Updated last year
• THU-ATOM / Drug-The-Whole-Genome
  ☆64Updated 3 weeks ago
• coleygroup / ms-pred
  Predicting tandem mass spectra from molecules
  ☆130Updated 3 weeks ago
• matchms / ms2deepscore
  Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
  ☆71Updated last week
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆142Updated 10 months ago
• twopin / CAMP
  predicting peptide-protein interactions
  ☆137Updated 2 years ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆175Updated 4 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆87Updated last month
• samsledje / ConPLex_dev
  ☆54Updated last year
• meowcat / MSNovelist
  ☆72Updated last year
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆138Updated 2 months ago
• jertubiana / ScanNet
  ☆138Updated 7 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆173Updated 4 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆131Updated 2 years ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated 2 months ago
• varun-shanker / structural-evolution
  ☆122Updated last year
• robpearc / DeepFoldRNA
  ☆38Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆115Updated 8 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆114Updated 3 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆182Updated 2 weeks ago
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆56Updated 2 years ago
• DweipayanG / GROMACS-Protein-Ligand
  ☆62Updated 3 years ago
• skinniderlab / CLM
  ☆20Updated last week
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆170Updated 2 years ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆261Updated last month
• sirius-ms / sirius
  SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…
  ☆137Updated 3 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆171Updated 2 months ago