SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
☆159Jul 20, 2026Updated this week
Alternatives and similar repositories for sirius
Users that are interested in sirius are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OpenAPI based libraries for different programming languages like R and Python☆24Jul 16, 2026Updated last week
- MS2Query - machine learning assisted library querying of MS/MS spectra☆58Nov 6, 2025Updated 8 months ago
- ☆75Aug 21, 2024Updated last year
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆263Updated this week
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆86Jul 17, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆59Aug 1, 2024Updated last year
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆32Dec 19, 2024Updated last year
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆57Apr 23, 2026Updated 3 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- Public Workflows at GNPS☆65Jan 30, 2024Updated 2 years ago
- mzmine source code repository☆291Jul 13, 2026Updated last week
- Tandem Mass Spectrum Prediction with Graph Transformers☆100Aug 26, 2024Updated last year
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Mar 12, 2026Updated 4 months ago
- Predicting tandem mass spectra from molecules☆146Jul 9, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Jun 3, 2021Updated 5 years ago
- The similarity score for spectral comparison☆91Mar 5, 2025Updated last year
- asari, metabolomics data preprocessing☆68Updated this week
- https://taxonomicallyinformedannotation.github.io/tima☆16Updated this week
- Universal workbench incorporating msdial, msfinder, and mrmprobs☆117Updated this week
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆81Jun 5, 2024Updated 2 years ago
- Search spectral library with entropy similarity☆21Apr 21, 2025Updated last year
- A python client for the ClassyFire API☆17May 7, 2020Updated 6 years ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆63Jul 9, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆41Mar 16, 2026Updated 4 months ago
- eMetabolomics project: Mass Annotation based on in silico Generated Metabolites☆17Oct 30, 2022Updated 3 years ago
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆145May 8, 2026Updated 2 months ago
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 3 years ago
- ☆29Jun 23, 2023Updated 3 years ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆62Jul 13, 2024Updated 2 years ago
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆35Mar 21, 2024Updated 2 years ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆20Jun 13, 2026Updated last month
- This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis☆230Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆194Jun 5, 2026Updated last month
- ☆24Mar 26, 2025Updated last year
- Tool for reliability assessment of omics peprocessing☆12Jan 13, 2026Updated 6 months ago
- ☆28Nov 30, 2023Updated 2 years ago
- Annotation of in source LC/MS data☆13Oct 19, 2024Updated last year
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆21Oct 15, 2024Updated last year
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆20Jan 24, 2024Updated 2 years ago