weizhou0 / qtl
☆25Updated 6 months ago
Alternatives and similar repositories for qtl:
Users that are interested in qtl are comparing it to the libraries listed below
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆24Updated 3 years ago
- ☆20Updated 6 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆35Updated 10 months ago
- Robust Allele Specific Quantification and quality controL☆38Updated 3 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆12Updated 3 months ago
- CELLEX (CELL-type EXpression-specificity)☆38Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago
- Colocalization analysis of genetic association signals☆50Updated last month
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆34Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆16Updated last month
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆29Updated 2 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- Clone identification from single-cell data☆60Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 11 months ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- ☆18Updated 10 months ago
- ☆16Updated 6 months ago
- InstaPrism is an R package for fast implementation of BayesPrism☆35Updated 7 months ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆24Updated 2 years ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- ☆31Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago