SCREE (Single-cell CRISPR screen data analysEs and perturbation modEling) is a workflow to perform quality control and analyses of multimodal single-cell CRISPR screen datasets.
☆11Oct 13, 2022Updated 4 years ago
Alternatives and similar repositories for SCREE
Users that are interested in SCREE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The R Bioconductor package for scMAGeCK.☆14Jul 10, 2026Updated 3 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆41Updated this week
- ☆18Feb 12, 2026Updated 8 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ☆16Mar 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Causal inference, differential expression, and co-expression for scRNA-seq☆22Jun 11, 2026Updated 4 months ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆23Oct 10, 2024Updated 2 years ago
- ☆23Mar 2, 2026Updated 7 months ago
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 5 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Oct 4, 2026Updated 2 weeks ago
- a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…☆19Apr 17, 2025Updated last year
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 8 months ago
- Publication Page for ArchR Manuscript 2020☆25Aug 17, 2021Updated 5 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Jul 31, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆28Feb 24, 2025Updated last year
- ☆36Apr 8, 2023Updated 3 years ago
- The most comprehensive database designed for the analysis and visualization of single cell perturbation data☆11Feb 6, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- ☆17Mar 20, 2022Updated 4 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆30Aug 13, 2021Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- ☆12May 11, 2016Updated 10 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆99Jul 31, 2019Updated 7 years ago
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- ☆15Oct 15, 2026Updated last week
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated 2 years ago
- ☆10Apr 7, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assembly and Annotation of the Human Immune Health Atlas☆29Aug 28, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated last week
- ☆12Jun 16, 2023Updated 3 years ago
- Awesome list of HiC data analysing tools☆11May 3, 2023Updated 3 years ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Motif Enrichment In Ranked Lists Of Peaks☆10Jun 17, 2021Updated 5 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago