brwnj / bcl2fastqLinks
NextSeq specific bcl2fastq2 wrapper.
☆55Updated 4 years ago
Alternatives and similar repositories for bcl2fastq
Users that are interested in bcl2fastq are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- ☆83Updated 3 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- ☆96Updated 3 years ago
- ☆78Updated 11 years ago
- My bioinfo toolbox☆50Updated 10 months ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Read visualizer for structural variants☆84Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Toolkit for processing TAB-delimited format☆62Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- ☆63Updated 5 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago