brwnj / bcl2fastqLinks
NextSeq specific bcl2fastq2 wrapper.
☆55Updated 4 years ago
Alternatives and similar repositories for bcl2fastq
Users that are interested in bcl2fastq are comparing it to the libraries listed below
Sorting:
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- ☆83Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- ☆95Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆78Updated 11 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- ☆63Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 weeks ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Toolkit for processing TAB-delimited format☆62Updated last year
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- My bioinfo toolbox☆50Updated 8 months ago
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago