brwnj / bcl2fastqLinks
NextSeq specific bcl2fastq2 wrapper.
☆53Updated 4 years ago
Alternatives and similar repositories for bcl2fastq
Users that are interested in bcl2fastq are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- ☆82Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- ☆57Updated 5 years ago
- ☆94Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 6 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Next-Generation Sequencing(NGS) toolkits.☆46Updated 9 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- SURPI☆84Updated 9 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- ☆68Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- A 3'-end adapter contaminant trimmer☆94Updated 7 years ago
- Assembly Based ReAligner☆74Updated 7 years ago