Biopieces is a bioinformatic framework of tools easily used and easily created.
☆143Aug 2, 2018Updated 7 years ago
Alternatives and similar repositories for biopieces
Users that are interested in biopieces are comparing it to the libraries listed below
Sorting:
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Linked-Read Alignment Tool☆26May 16, 2019Updated 6 years ago
- Cutadapt removes adapter sequences from sequencing reads☆575Updated this week
- Bring Your Own Bioinformatics☆27Apr 28, 2016Updated 9 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213May 14, 2020Updated 5 years ago
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- BEDOPS: high-performance genomic feature operations☆364Apr 29, 2025Updated 10 months ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆831Feb 10, 2026Updated last month
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- ☆26Oct 17, 2018Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 9 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Mar 15, 2021Updated 5 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,531Jun 1, 2025Updated 9 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- BWK awk modified for biological data☆638Aug 11, 2022Updated 3 years ago
- TransDecoder source☆302Sep 29, 2025Updated 5 months ago
- Assemble large genomes using short reads☆328Mar 11, 2026Updated last week
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 6 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,303Updated this week
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 6 years ago
- Practical, reusable scripts for bioinformatics☆102Feb 12, 2019Updated 7 years ago
- bedtools - the swiss army knife for genome arithmetic☆1,027Mar 11, 2025Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Mar 10, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,429Mar 12, 2026Updated last week
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 2 years ago
- Simple FASTQ quality assessment using Python☆108Feb 24, 2026Updated 3 weeks ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆354Jul 19, 2025Updated 8 months ago