janelia-cellmap / cellmap-models
Repository of model architectures and network weights used for CellMap segmentations.
☆13Updated 2 months ago
Alternatives and similar repositories for cellmap-models:
Users that are interested in cellmap-models are comparing it to the libraries listed below
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆28Updated this week
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated last week
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated this week
- ☆18Updated last year
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- MorphoFeatures code and data☆20Updated last year
- ☆35Updated last week
- ☆20Updated last month
- A template repo used to make new napari plugins☆16Updated this week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆51Updated 3 weeks ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated this week
- Guides and code for 3D nuclear instance segmentation☆21Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 8 months ago
- ☆31Updated 2 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆54Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Evaluating the quality of a cell segmentation method without reference.☆8Updated last year
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- QuPath extension for Cellsparse☆18Updated 3 months ago
- python tools for BigDataViewer☆22Updated 3 months ago
- Distributed segmentation for bio-image-analysis☆37Updated 8 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago