Repository of model architectures and network weights used for CellMap segmentations.
☆13Jul 31, 2026Updated 2 months ago
Alternatives and similar repositories for cellmap-models
Users that are interested in cellmap-models are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 6 months ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆43Jul 10, 2026Updated 3 months ago
- A portal for viewing FIB-SEM datasets☆14May 13, 2026Updated 5 months ago
- ☆13Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆38Oct 8, 2026Updated 2 weeks ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Oct 12, 2026Updated last week
- Scripts for building, training and validating CNNs for Connectomics☆13Mar 24, 2023Updated 3 years ago
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- ☆24May 1, 2025Updated last year
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- A pilot experiment to dissminate information about Janelia's biomaging data formats.☆12Jan 30, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 8 months ago
- ☆67Oct 8, 2026Updated 2 weeks ago
- ☆10Aug 22, 2020Updated 6 years ago
- Laser scanning microscope acquisition software☆18Feb 27, 2025Updated last year
- ☆12Mar 18, 2024Updated 2 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- A Machine Learning Classifier for Lung & Colon Cancer Histopathological Images.☆20Jun 21, 2022Updated 4 years ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Jun 20, 2025Updated last year
- official implementation of the PatchPerPix instance segmentation method☆36Jun 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Oct 18, 2026Updated last week
- Unsupervised Instance Segmentation in Microscopy☆28Apr 3, 2024Updated 2 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆17Oct 18, 2026Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- High quality visualization for volumetric image data☆63Updated this week
- A contrastive learning framework for 3D electron microscopy data☆13Jan 17, 2023Updated 3 years ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆35Updated this week
- ☆13Jul 6, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.☆37Mar 22, 2026Updated 7 months ago
- Janelia Workstation☆30Sep 15, 2026Updated last month
- Conversion of neuroimaging data for display in Neuroglancer☆31Aug 19, 2026Updated 2 months ago
- CryoVIT: Efficient Segmentation of Cryo-electron Tomograms with Vision Foundation Models☆12Apr 25, 2026Updated 6 months ago
- ☆17Jul 6, 2023Updated 3 years ago
- Generalized algorithm for agglomerative clustering of signed graphs☆15Dec 16, 2021Updated 4 years ago
- Cell Segmenter using Machine Learning☆10Aug 1, 2023Updated 3 years ago