Alternatives and similar repositories for pDeep

Users that are interested in pDeep are comparing it to the libraries listed below

• horsepurve / DeepRTplus
  Deep (Transfer) Learning for Peptide Retention Time Prediction
  ☆53Updated 4 years ago
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆34Updated 2 years ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆13Updated last week
• CompOmics / DeepLC
  DeepLC: Retention time prediction for peptides carrying any modification.
  ☆73Updated 2 weeks ago
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated 9 months ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆43Updated 3 years ago
• HuanLab / BUDDY
  Bottom-up MS/MS interrogation & Experiment-specific global annotation
  ☆30Updated last year
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆92Updated 2 years ago
• markmipt / ms1searchpy
  ☆12Updated last week
• meowcat / MSNovelist
  ☆72Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated last week
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated last month
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆52Updated last week
• volpato30 / DeepNovoV2
  Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.
  ☆27Updated 6 years ago
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆23Updated 8 months ago
• orsburn / LCMSMethods
  The Git Account of LCMSMethods.org
  ☆11Updated 6 years ago
• pnnl / deimos
  ☆36Updated last month
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆21Updated last week
• MatteoLacki / timspy
  ☆22Updated 4 years ago
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆32Updated this week
• pFindStudio / pGlyco3
  ☆21Updated 11 months ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆143Updated this week
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆21Updated 11 months ago
• yonghanyu / DeepSearch
  ☆21Updated 10 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆30Updated last month
• levitsky / identipy
  ☆10Updated 5 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆44Updated last year
• pFindStudio / pDeepXL
  pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning
  ☆12Updated 4 years ago
• griquelme / tidyms
  TidyMS: Tools for working with MS data in untargeted metabolomics
  ☆60Updated last year
• statisticalbiotechnology / diffacto
  ☆13Updated last year