pFindStudio / pDeepLinks
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning
☆37Updated 5 years ago
Alternatives and similar repositories for pDeep
Users that are interested in pDeep are comparing it to the libraries listed below
Sorting:
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- Deep (Transfer) Learning for Peptide Retention Time Prediction☆51Updated 3 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆64Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- MS/MS prediction for peptides☆22Updated 4 years ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆32Updated 3 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆29Updated last year
- An open-source Python package to unify raw MS data accession and storage.☆24Updated last month
- The Git Account of LCMSMethods.org☆11Updated 6 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 2 months ago
- ☆20Updated 3 months ago
- Instrument Application Programming Interface☆47Updated 3 months ago
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Updated 2 months ago
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 3 years ago
- Deep learning framework for proteomics☆127Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆44Updated 3 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆44Updated 2 years ago
- ☆14Updated 8 months ago
- R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Updated last year
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆16Updated last year
- ☆13Updated last year
- Proteomics Mass Spectrometry Datasets for Machine Learning☆16Updated 9 months ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆14Updated 6 months ago
- Democratizing ML in proteomics☆37Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆49Updated last week