Alternatives and similar repositories for pDeep

Users that are interested in pDeep are comparing it to the libraries listed below

• horsepurve / DeepRTplus
  Deep (Transfer) Learning for Peptide Retention Time Prediction
  ☆52Updated 3 years ago
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆31Updated 2 years ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆12Updated 3 weeks ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆42Updated 2 years ago
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆89Updated 2 years ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆70Updated this week
• markmipt / ms1searchpy
  ☆12Updated 2 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆43Updated last week
• meowcat / MSNovelist
  ☆69Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆45Updated 5 months ago
• orsburn / LCMSMethods
  The Git Account of LCMSMethods.org
  ☆11Updated 6 years ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated 3 weeks ago
• HuanLab / BUDDY
  Bottom-up MS/MS interrogation & Experiment-specific global annotation
  ☆30Updated 8 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• fickludd / dinosaur
  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
  ☆45Updated 3 years ago
• levitsky / identipy
  ☆10Updated 3 weeks ago
• volpato30 / DeepNovoV2
  Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.
  ☆25Updated 6 years ago
• pnnl / deimos
  ☆36Updated 2 months ago
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆18Updated 6 months ago
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated 4 months ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆19Updated 2 weeks ago
• Philipbear / msbuddy
  a python package for molecular formula analysis in MS-based small molecule studies
  ☆31Updated last month
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆131Updated last week
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆21Updated 3 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆82Updated last year
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆19Updated last year
• pFindStudio / pDeepXL
  pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning
  ☆12Updated 4 years ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated 2 years ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆27Updated last week
• MannLabs / alphadia
  modular & open DIA search
  ☆74Updated last week