Alternatives and similar repositories for mantis-viewer

Users that are interested in mantis-viewer are comparing it to the libraries listed below

• hms-dbmi / viv
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
  ☆333Updated last week
• vitessce / vitessce
  Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
  ☆237Updated this week
• Taylor-CCB-Group / MDV
  Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing and visualizing spatial and molecular datasets. Code licens…
  ☆26Updated this week
• OzetteTech / comparative-embedding-visualization
  A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
  ☆48Updated last year
• recursionpharma / rxrx-datasets
  READMEs for RxRx.ai datasets
  ☆27Updated 8 months ago
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆38Updated 2 months ago
• imjoy-team / ImJoy
  ImJoy: Deep Learning Made Easy!
  ☆190Updated 2 years ago
• boscoh / jolecule
  Javascript viewer for proteins and DNA with animated views
  ☆56Updated 2 years ago
• PAIR-code / scatter-gl
  Interactive 3D / 2D webgl-accelerated scatter plot point renderer
  ☆190Updated 2 weeks ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆28Updated last year
• fish-quant / rna2seg
  rna2seg
  ☆17Updated 8 months ago
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆181Updated last week
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆25Updated last year
• labsyspharm / minerva-story
  Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…
  ☆55Updated last year
• abdenlab / ipylangchat
  Simple Jupyter chat UI for LangChain
  ☆11Updated last year
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 4 years ago
• wikipathways / pvjs
  JavaScript-based pathway viewer and editor
  ☆35Updated 11 months ago
• czi-ai / scldm
  single-cell latent diffusion model
  ☆36Updated this week
• PolusAI / bfio
  Interface to the Bioformats Java library
  ☆13Updated last month
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆152Updated last week
• chanzuckerberg / cz-benchmarks
  cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.
  ☆48Updated last month
• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆69Updated last week
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆35Updated 10 months ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆34Updated 3 years ago
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆119Updated 3 years ago
• laminlabs / readfcs
  Read fcs files.
  ☆12Updated 2 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆134Updated last week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆80Updated 6 months ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆21Updated 2 years ago
• iVis-at-Bilkent / newt
  A web application to visualize and edit pathway models
  ☆59Updated this week