uf-hobi-informatics-lab / ClinicalTransformerNER
a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
☆147Updated last year
Alternatives and similar repositories for ClinicalTransformerNER
Users that are interested in ClinicalTransformerNER are comparing it to the libraries listed below
Sorting:
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- ☆98Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆165Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated 9 months ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- SciFive: a text-text transformer model for biomedical literature☆94Updated 11 months ago
- Pre-trained Language Model for Biomedical Question Answering☆122Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆187Updated 2 years ago
- Transformers for Clinical NLP☆24Updated 2 weeks ago
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆295Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆78Updated last week
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- ☆38Updated 3 years ago
- A collection of papers on automated medical coding from free-texts☆140Updated 4 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated 2 weeks ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆88Updated 3 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆69Updated 2 years ago
- auto icd coding with prompt☆49Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆29Updated last year
- BioELECTRA☆50Updated 3 years ago