a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
☆157Sep 13, 2023Updated 3 years ago
Alternatives and similar repositories for ClinicalTransformerNER
Users that are interested in ClinicalTransformerNER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A project for developing transformer-based models for clinical relation extraction☆133Aug 15, 2023Updated 3 years ago
- ☆19Apr 8, 2024Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32May 22, 2024Updated 2 years ago
- all scripts used in gatortron project☆141Nov 3, 2023Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆164Jul 29, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆600Mar 25, 2023Updated 3 years ago
- ☆19Jul 7, 2025Updated last year
- repository for Publicly Available Clinical BERT Embeddings☆776Aug 25, 2020Updated 6 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆452Oct 17, 2022Updated 3 years ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆20Jun 18, 2022Updated 4 years ago
- Code for Contextual Autocomplete paper published in MLHC2020☆12Aug 7, 2021Updated 5 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83May 24, 2025Updated last year
- Sequence tagger based on BERT☆20Apr 28, 2022Updated 4 years ago
- ☆45Jul 13, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Library for clinical NLP with spaCy.☆680Jun 4, 2026Updated 3 months ago
- ☆98Jul 7, 2023Updated 3 years ago
- Embedding Complexity In the Data Representation Instead of In the Model (arXiv:1802.04233)☆24Feb 14, 2018Updated 8 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆53Aug 12, 2021Updated 5 years ago
- Weakly supervised medical named entity classification☆72Dec 23, 2022Updated 3 years ago
- Implementation of Nested Named Entity Recognition using BERT☆138Oct 29, 2021Updated 4 years ago
- Clinical NLP concept extraction of ADEs in the 2018 n2c2 Adverse Drug Events and Medication Extraction (Track 2). Includes data preproce…☆16Nov 21, 2020Updated 5 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Jan 12, 2022Updated 4 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆85Nov 15, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆346Nov 9, 2021Updated 4 years ago
- PMC-Patients☆114Jun 7, 2024Updated 2 years ago
- ☆38Mar 27, 2022Updated 4 years ago
- ☆64Jul 4, 2023Updated 3 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆616Aug 15, 2023Updated 3 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆74Aug 4, 2022Updated 4 years ago
- BERT implementation for radiology full-text reports☆12Jul 25, 2020Updated 6 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆462Apr 5, 2022Updated 4 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆284Oct 18, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆103May 17, 2025Updated last year
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 3 years ago
- ☆13Feb 20, 2020Updated 6 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆234Jun 6, 2025Updated last year
- ☆15Apr 28, 2020Updated 6 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Apr 11, 2023Updated 3 years ago