a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
☆156Sep 13, 2023Updated 2 years ago
Alternatives and similar repositories for ClinicalTransformerNER
Users that are interested in ClinicalTransformerNER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A project for developing transformer-based models for clinical relation extraction☆131Aug 15, 2023Updated 2 years ago
- all scripts used in gatortron project☆136Nov 3, 2023Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆164Jul 29, 2021Updated 4 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆597Mar 25, 2023Updated 3 years ago
- repository for Publicly Available Clinical BERT Embeddings☆769Aug 25, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆20Jun 18, 2022Updated 4 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆442Oct 17, 2022Updated 3 years ago
- Sequence tagger based on BERT☆20Apr 28, 2022Updated 4 years ago
- ☆45Jul 13, 2023Updated 2 years ago
- Code for Contextual Autocomplete paper published in MLHC2020☆12Aug 7, 2021Updated 4 years ago
- Library for clinical NLP with spaCy.☆669Jun 4, 2026Updated last month
- ☆98Jul 7, 2023Updated 3 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆52Aug 12, 2021Updated 4 years ago
- Embedding Complexity In the Data Representation Instead of In the Model (arXiv:1802.04233)☆24Feb 14, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Dataset for the NLPMC @ NAACL 2021 Paper: Assertion Detection in Clinical Notes: Medical Language Models to the Rescue?☆16Sep 28, 2021Updated 4 years ago
- Clinical NLP concept extraction of ADEs in the 2018 n2c2 Adverse Drug Events and Medication Extraction (Track 2). Includes data preproce…☆16Nov 21, 2020Updated 5 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated 2 years ago
- Weakly supervised medical named entity classification☆73Dec 23, 2022Updated 3 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆298Jan 12, 2022Updated 4 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆345Nov 9, 2021Updated 4 years ago
- ☆64Jul 4, 2023Updated 3 years ago
- ☆38Mar 27, 2022Updated 4 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆78Nov 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆615Aug 15, 2023Updated 2 years ago
- BERT implementation for radiology full-text reports☆11Jul 25, 2020Updated 5 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆74Aug 4, 2022Updated 3 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆456Apr 5, 2022Updated 4 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆286Oct 18, 2023Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 3 years ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆102May 17, 2025Updated last year
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated 11 months ago
- ☆13Feb 20, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆226Jun 6, 2025Updated last year
- ☆15Apr 28, 2020Updated 6 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Apr 11, 2023Updated 3 years ago
- Service to evaluate quality measure and cohort specifications against a target patient data set.☆11Jun 2, 2022Updated 4 years ago
- auto icd coding with prompt☆49May 7, 2024Updated 2 years ago
- ☆16Dec 14, 2022Updated 3 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆331Feb 19, 2024Updated 2 years ago