Lybarger / sdoh_extractionLinks
☆18Updated last year
Alternatives and similar repositories for sdoh_extraction
Users that are interested in sdoh_extraction are comparing it to the libraries listed below
Sorting:
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last week
- ☆18Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated last month
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆15Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated last month
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- A python package for removing duplicate text in clinical notes or other documents☆37Updated 4 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆36Updated last year
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- ☆61Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated 2 weeks ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆80Updated 2 weeks ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- ☆39Updated 2 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆29Updated last year
- ☆29Updated 3 years ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆106Updated 10 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated last year
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated 3 weeks ago
- Blog post on Medium☆49Updated 2 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 2 weeks ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆68Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last month
- Transformers for Clinical NLP☆25Updated this week