Lybarger / sdoh_extractionLinks
☆18Updated last year
Alternatives and similar repositories for sdoh_extraction
Users that are interested in sdoh_extraction are comparing it to the libraries listed below
Sorting:
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- ☆18Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆62Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆79Updated last week
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆67Updated 10 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆28Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated 2 weeks ago
- Transformers for Clinical NLP☆25Updated 2 weeks ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆68Updated last month
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- ☆60Updated last year
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆14Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆93Updated 11 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- init☆12Updated 6 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆36Updated last year
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆78Updated last week
- ☆29Updated 3 years ago
- ☆40Updated 3 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models☆23Updated 3 weeks ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆112Updated last year
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆29Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆142Updated last month
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated last month
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated 3 weeks ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago