Alternatives and similar repositories for sdoh_extraction

Users that are interested in sdoh_extraction are comparing it to the libraries listed below

• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆48Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆70Updated 6 months ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 8 years ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆200Updated 5 months ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆65Updated 5 months ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆86Updated last week
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆30Updated last year
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 5 years ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆97Updated 4 months ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆40Updated 6 months ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆144Updated last year
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆38Updated 5 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆71Updated 3 weeks ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆143Updated last year
• hibaahsan / MIMIC-SBDH
  Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
  ☆18Updated 3 years ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆87Updated 2 weeks ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆147Updated last year
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆157Updated last week
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆307Updated last year
• asappresearch / clip
  ☆29Updated 4 years ago
• landiisotta / convae_architecture
  ☆41Updated 3 years ago
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆42Updated last year
• nwams / ClinicalBERT-Deep-Learning--Predicting-Hospital-Readmission-Using-Transformer
  Blog post on Medium
  ☆50Updated 3 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• starmpcc / Asclepius
  Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
  ☆113Updated last year
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆116Updated 2 years ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆126Updated 2 years ago