This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting useful temporal relations from the clinical narrative.
☆37May 21, 2025Updated 10 months ago
Alternatives and similar repositories for thymedata
Users that are interested in thymedata are comparing it to the libraries listed below
Sorting:
- ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a…☆12Jul 22, 2022Updated 3 years ago
- ☆12Apr 13, 2023Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆51Mar 6, 2025Updated last year
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Mar 13, 2023Updated 3 years ago
- Code for Dligach and Miller 2018 paper Learning Patient Representations from Text☆10Apr 2, 2023Updated 2 years ago
- Hadoop integration code for working with with Apache cTAKES☆10Feb 11, 2014Updated 12 years ago
- Automatically exported from code.google.com/p/negex☆36May 13, 2022Updated 3 years ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Dec 8, 2022Updated 3 years ago
- OncoText is an information extraction service for breast pathology reports. It supports over 20 categories including DCIS, includes pretr…☆24Oct 22, 2018Updated 7 years ago
- UMLS in Python with MongoDB.☆18Dec 7, 2018Updated 7 years ago
- Code for LSTM based model for PICO element detection☆11Jul 19, 2018Updated 7 years ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆15Aug 20, 2021Updated 4 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Jul 27, 2015Updated 10 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆35Jan 2, 2024Updated 2 years ago
- ☆98Jul 7, 2023Updated 2 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆72May 5, 2025Updated 10 months ago
- ☆17Oct 10, 2019Updated 6 years ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Nov 8, 2023Updated 2 years ago
- Healthcare AI Model Evaluator (HAIME) empowers healthcare organizations to independently evaluate and customize AI solutions, addressing …☆45Feb 17, 2026Updated last month
- Medication Extraction and Reconciliation Knowledge Instrument☆13Dec 5, 2013Updated 12 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- ☆11Oct 22, 2018Updated 7 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- BERT models pretrained on the CORD-19 Kaggle dataset☆15Jun 8, 2020Updated 5 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14May 6, 2025Updated 10 months ago
- SerendipSlim is a visualization tool for exploring topic models built on large collections of text documents.☆39Apr 24, 2018Updated 7 years ago
- Sandbox for playing with Neo4J and graph approaches to NLP☆12Jul 12, 2017Updated 8 years ago
- This is the code for Negation and Speculation Cue Detection and Scope Resolution using BERT, XLNet and RoBERTa☆34Jun 26, 2021Updated 4 years ago
- Document exploration tool☆12Sep 6, 2016Updated 9 years ago
- Code and data for acl2019 paper "Incremental Learning from Scratch for Task-Oriented Dialogue Systems"☆27Jun 27, 2019Updated 6 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- Public release of the DeepPhe analytic software☆30Nov 26, 2025Updated 3 months ago
- This repository contains the data and code created under the project NLP4Rare-cm-uc3m.☆10Sep 14, 2021Updated 4 years ago
- Technologically Assisted Reviews in Empirical Medicine☆23Apr 17, 2025Updated 11 months ago
- Ollie is a open information extractor that uses dependency parses.☆12Sep 27, 2013Updated 12 years ago
- Repository for managing python tools that model standoff annotations for i2b2 2014 challenge☆14May 12, 2015Updated 10 years ago
- tools to analyze a collection of texts and identify relevant words☆12May 20, 2018Updated 7 years ago
- Find more info @ youtube.com/axiomaticuncertainty☆11Aug 20, 2018Updated 7 years ago