stylerw / thymedataLinks
This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting useful temporal relations from the clinical narrative.
☆37Updated 4 months ago
Alternatives and similar repositories for thymedata
Users that are interested in thymedata are comparing it to the libraries listed below
Sorting:
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Conversion from brat-flavored standoff to CoNLL format☆55Updated 4 years ago
- ☆93Updated 6 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆130Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆334Updated 3 years ago
- Code for the emrQA question answering dataset☆149Updated 3 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆65Updated 4 years ago
- ☆74Updated last year
- NCBI disease corpus - related resources☆30Updated 8 years ago
- Named Entity Recognition for biomedical entities☆48Updated 2 years ago
- ☆122Updated 7 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Updated 5 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆172Updated 2 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated 2 years ago
- Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019☆52Updated 2 years ago
- Machine reading comprehension on clinical case reports☆149Updated last month
- BioBert Pytorch☆116Updated 2 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆49Updated 5 years ago
- Code for AttentionMeSH☆17Updated 7 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- This is an implementation of Hearst patterns, for finding hyponyms, written in Python.☆87Updated 3 years ago
- A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.☆24Updated 7 years ago
- A collection of utilities for manipulating data and calculating inter-annotator agreement in brat annotation files.☆29Updated 5 years ago
- Python wraper for MetaMap☆173Updated 5 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 4 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago