stylerw / thymedata
This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting useful temporal relations from the clinical narrative.
☆37Updated 9 years ago
Alternatives and similar repositories for thymedata:
Users that are interested in thymedata are comparing it to the libraries listed below
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year
- ☆90Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- ☆72Updated last year
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last month
- Repository used to collect biomedical corpus on the Internet!☆34Updated 4 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆163Updated last year
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 4 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- NCBI disease corpus - related resources☆28Updated 7 years ago
- This is the code for Negation and Speculation Cue Detection and Scope Resolution using BERT, XLNet and RoBERTa☆32Updated 3 years ago
- ☆25Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- ☆35Updated 4 years ago
- Python wraper for MetaMap☆171Updated 4 years ago
- Transformers for Clinical NLP☆24Updated 2 months ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 4 years ago
- Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019☆51Updated 2 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago