lindvalllab / clinicalXLNet
Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
☆49Updated 3 years ago
Alternatives and similar repositories for clinicalXLNet:
Users that are interested in clinicalXLNet are comparing it to the libraries listed below
- ☆98Updated 3 years ago
- ☆59Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- ☆22Updated 3 years ago
- Code for the paper "Knowledge Base Completion for Constructing Problem-Oriented Medical Records" at MLHC 2020☆11Updated 3 years ago
- ☆38Updated 3 years ago
- ☆29Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆101Updated 4 years ago
- Source code for Medical Concept Embedding with Time-Aware Embedding☆22Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 5 years ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 5 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆51Updated 4 years ago
- ☆53Updated 5 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- EHR2Vec is a embedding translation tool for medical entities based on attention mechanism. We have provided a version of tensorflow imple…☆13Updated 4 years ago
- This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in t…☆18Updated last year
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆29Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated this week
- ☆28Updated 4 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- My heuristic script for sentence tokenization of mimic notes☆8Updated 7 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago