uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
A project for developing transformer-based models for clinical relation extraction
☆127Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ClinicalTransformerRelationExtraction
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆144Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆157Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆174Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆161Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆75Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- ☆95Updated 2 years ago
- SciFive: a text-text transformer model for biomedical literature☆90Updated 5 months ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated last year
- Pre-trained Language Model for Biomedical Question Answering☆122Updated last year
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆58Updated 2 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 4 years ago
- Code for the emrQA question answering dataset☆143Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆47Updated 6 months ago
- BioELECTRA☆51Updated 3 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆50Updated 2 years ago
- ☆65Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆286Updated 2 years ago
- Repository used to collect biomedical corpus on the Internet!☆31Updated 4 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆34Updated 9 months ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆173Updated 2 years ago
- Weakly supervised medical named entity classification☆70Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆87Updated 3 months ago
- This is the code for Negation and Speculation Cue Detection and Scope Resolution using BERT, XLNet and RoBERTa☆31Updated 3 years ago
- ☆90Updated 5 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆60Updated 5 months ago
- ☆144Updated 11 months ago
- PubMed PICO Element Detection Dataset☆55Updated 6 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆67Updated 2 years ago