uf-hobi-informatics-lab / GatorTronLinks
all scripts used in gatortron project
☆118Updated last year
Alternatives and similar repositories for GatorTron
Users that are interested in GatorTron are comparing it to the libraries listed below
Sorting:
- General tutorials for the setup and use of MedCAT.☆37Updated last month
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆67Updated last year
- Clinical text summarization by adapting large language models☆143Updated 10 months ago
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆152Updated 5 months ago
- PMC-Patients☆97Updated last year
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆69Updated last year
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆106Updated 10 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆176Updated 2 weeks ago
- Med-BERT, contextualized embedding model for structured EHR data☆287Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆185Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last month
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- A collection of papers on automated medical coding from free-texts☆144Updated 6 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last week
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆87Updated last year
- ☆18Updated last year
- Transformers for Clinical NLP☆25Updated last week
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆33Updated last year
- ☆61Updated last year
- Code and data for TrialGPT.☆110Updated 5 months ago
- ☆64Updated 4 years ago
- A large-scale (194k), Multiple-Choice Question Answering (MCQA) dataset designed to address realworld medical entrance exam questions.☆218Updated 2 years ago
- ☆42Updated last year
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆53Updated 2 years ago