Alternatives and similar repositories for GatorTron

Users that are interested in GatorTron are comparing it to the libraries listed below

• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆152Updated last year
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆30Updated last year
• som-shahlab / medalign
  MedAlign is a clinician-generated dataset for instruction following with electronic medical records.
  ☆99Updated 7 months ago
• pmc-patients / pmc-patients
  PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…
  ☆74Updated 2 years ago
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆205Updated 6 months ago
• MiuLab / PLM-ICD
  PLM-ICD: Automatic ICD Coding with Pretrained Language Models
  ☆76Updated 2 years ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆48Updated last year
• starmpcc / Asclepius
  Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
  ☆113Updated last year
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆41Updated 7 months ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆311Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 7 months ago
• BIDS-Xu-Lab / Me-LLaMA
  A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks
  ☆165Updated 11 months ago
• hiesingerlab / almanac-retrieval
  Almanac: Retrieval-Augmented Language Models for Clinical Medicine
  ☆37Updated last year
• zhao-zy15 / PMC-Patients
  PMC-Patients
  ☆103Updated last year
• MIDRC / Stanford_Penn_MIDRC_Deidentifier
  A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.
  ☆97Updated last month
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆150Updated last year
• ncbi / MedCPT
  Code for MedCPT, a model for zero-shot biomedical information retrieval.
  ☆222Updated last year
• ncbi-nlp / TrialGPT
  Code and data for TrialGPT.
  ☆137Updated 11 months ago
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆120Updated 2 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆79Updated 3 years ago
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆68Updated 6 months ago
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆517Updated 5 months ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated 3 months ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated last year
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆70Updated 7 months ago
• luoyuanlab / Clinical-Longformer
  ☆63Updated 2 years ago
• abachaa / MTS-Dialog
  A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.
  ☆104Updated 6 months ago
• pubmedqa / pubmedqa
  PubMedQA: A Dataset for Biomedical Research Question Answering
  ☆396Updated 2 years ago
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆26Updated 4 months ago