Alternatives and similar repositories for clinicalBERT:

Users that are interested in clinicalBERT are comparing it to the libraries listed below

• EmilyAlsentzer / clinicalBERT
  repository for Publicly Available Clinical BERT Embeddings
  ☆710Updated 4 years ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆281Updated last year
• jamesmullenbach / caml-mimic
  multilabel classification of EHR notes
  ☆286Updated 4 years ago
• nwams / ClinicalBERT-Deep-Learning--Predicting-Hospital-Readmission-Using-Transformer
  Blog post on Medium
  ☆49Updated 2 years ago
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆571Updated 2 years ago
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆484Updated this week
• dmis-lab / biobert-pytorch
  PyTorch Implementation of BioBERT
  ☆325Updated last year
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆293Updated 3 years ago
• naver / biobert-pretrained
  BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  ☆687Updated 4 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• gmichalo / UmlsBERT
  ☆98Updated 3 years ago
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆590Updated last year
• clinicalml / embeddings
  Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
  ☆247Updated 4 years ago
• 3778 / icd-prediction-mimic
  Predicting ICD Codes from Clinical Notes
  ☆60Updated 4 years ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆399Updated 8 months ago
• abachaa / MedQuAD
  Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites
  ☆382Updated last year
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆325Updated 3 years ago
• ncbi-nlp / BioWordVec
  ☆151Updated last year
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆171Updated 4 years ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆74Updated 2 years ago
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆137Updated 3 months ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆135Updated last year
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆159Updated 3 years ago
• abachaa / Existing-Medical-QA-Datasets
  Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
  ☆287Updated last year
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆109Updated 2 years ago
• lsy3 / clinical-notes-diagnosis-dl-nlp
  ☆69Updated 3 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 2 years ago
• McGill-NLP / medal
  Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…
  ☆269Updated last year
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆92Updated 10 months ago
• hurcy / awesome-ehr-deeplearning
  Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.
  ☆425Updated 2 years ago