uf-hobi-informatics-lab / SDoH_SODALinks
☆18Updated last year
Alternatives and similar repositories for SDoH_SODA
Users that are interested in SDoH_SODA are comparing it to the libraries listed below
Sorting:
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆154Updated 2 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆427Updated 3 years ago
- System for Medical Concept Extraction and Linking☆420Updated last year
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆77Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆307Updated last year
- ☆220Updated 10 months ago
- A collection of papers on automated medical coding from free-texts☆148Updated 10 months ago
- Medical Concept Annotation Tool☆511Updated 3 months ago
- A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.☆10Updated 4 years ago
- ☆101Updated 3 years ago
- ☆152Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated this week
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆29Updated 2 years ago
- Blog post on Medium☆49Updated 3 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- ☆63Updated 2 years ago
- ☆38Updated 3 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 5 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 4 months ago
- General tutorials for the setup and use of MedCAT.☆40Updated 5 months ago
- Open source clinical text de-identification☆142Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83Updated 5 months ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆338Updated 3 years ago
- all scripts used in gatortron project☆124Updated 2 years ago
- ☆66Updated 4 years ago
- Predicting ICD Codes from Clinical Notes☆63Updated 5 years ago
- init☆12Updated 11 months ago