EmilyAlsentzer / clinicalBERT
repository for Publicly Available Clinical BERT Embeddings
☆714Updated 4 years ago
Alternatives and similar repositories for clinicalBERT
Users that are interested in clinicalBERT are comparing it to the libraries listed below
Sorting:
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆415Updated 2 years ago
- multilabel classification of EHR notes☆287Updated 4 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆592Updated last year
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆571Updated 2 years ago
- PyTorch Implementation of BioBERT☆328Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆283Updated last year
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆689Updated 4 years ago
- System for Medical Concept Extraction and Linking☆403Updated 9 months ago
- Medical Concept Annotation Tool☆494Updated this week
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆295Updated 3 years ago
- Blog post on Medium☆49Updated 2 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆247Updated 4 years ago
- Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems☆291Updated last year
- High-performance tool for negation and uncertainty detection in radiology reports☆162Updated last year
- ☆152Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆327Updated 3 years ago
- Python wraper for MetaMap☆172Updated 4 years ago
- ☆217Updated 5 months ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,053Updated last year
- Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites☆392Updated last year
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆425Updated 2 years ago
- ☆222Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated 9 months ago
- A collection of papers on automated medical coding from free-texts☆140Updated 4 months ago
- Medical Text Mining and Information Extraction with spaCy☆439Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆478Updated 5 months ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆442Updated 10 months ago
- Predicting ICD Codes from Clinical Notes☆61Updated 4 years ago
- Library for clinical NLP with spaCy.☆572Updated last month