EmilyAlsentzer / clinicalBERTView external linksLinks
repository for Publicly Available Clinical BERT Embeddings
☆752Aug 25, 2020Updated 5 years ago
Alternatives and similar repositories for clinicalBERT
Users that are interested in clinicalBERT are comparing it to the libraries listed below
Sorting:
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆434Oct 17, 2022Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 2 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,186Aug 13, 2023Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆611Aug 15, 2023Updated 2 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆706Jun 2, 2020Updated 5 years ago
- System for Medical Concept Extraction and Linking☆431Aug 12, 2024Updated last year
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Jan 12, 2022Updated 4 years ago
- multilabel classification of EHR notes☆298Jul 21, 2020Updated 5 years ago
- ☆101Feb 25, 2022Updated 3 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Nov 9, 2021Updated 4 years ago
- ☆221Dec 11, 2024Updated last year
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases☆3,129Nov 10, 2025Updated 3 months ago
- Library for clinical NLP with spaCy.☆632Aug 4, 2025Updated 6 months ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆155Sep 13, 2023Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆314Feb 19, 2024Updated last year
- Blog post on Medium☆51Oct 16, 2022Updated 3 years ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆471Jul 18, 2024Updated last year
- Medical Text Mining and Information Extraction with spaCy☆438Nov 1, 2022Updated 3 years ago
- CheXpert NLP tool to extract observations from radiology reports.☆396Feb 3, 2023Updated 3 years ago
- ☆55Apr 9, 2020Updated 5 years ago
- ☆153Nov 30, 2023Updated 2 years ago
- PyTorch Implementation of BioBERT☆350Jun 24, 2023Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Nov 26, 2025Updated 2 months ago
- Medical Concept Annotation Tool☆522Jul 25, 2025Updated 6 months ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆132Feb 15, 2023Updated 2 years ago
- Code for the emrQA question answering dataset☆152Feb 9, 2022Updated 4 years ago
- ☆63Jul 4, 2023Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆163Jul 29, 2021Updated 4 years ago
- Pre-trained Language Model for Biomedical Question Answering☆125Mar 24, 2023Updated 2 years ago
- ☆233Aug 15, 2017Updated 8 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆41May 27, 2020Updated 5 years ago
- Code for AttentionMeSH☆17Oct 5, 2018Updated 7 years ago
- Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.☆872Apr 16, 2023Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆33Aug 21, 2023Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆130Aug 15, 2023Updated 2 years ago
- The official code for MedKLIP: Medical Knowledge Enhanced Language-Image Pre-Training in Radiology. We propose to leverage medical specif…☆178Sep 4, 2023Updated 2 years ago
- ☆17Oct 24, 2020Updated 5 years ago
- BioBert Pytorch☆116Dec 9, 2022Updated 3 years ago