Alternatives and similar repositories for clinicalBERT

Users that are interested in clinicalBERT are comparing it to the libraries listed below

• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆420Updated 2 years ago
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆572Updated 2 years ago
• jamesmullenbach / caml-mimic
  multilabel classification of EHR notes
  ☆289Updated 4 years ago
• naver / biobert-pretrained
  BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  ☆690Updated 5 years ago
• dmis-lab / biobert-pytorch
  PyTorch Implementation of BioBERT
  ☆328Updated last year
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆593Updated last year
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆497Updated this week
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆404Updated 9 months ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆286Updated last year
• nwams / ClinicalBERT-Deep-Learning--Predicting-Hospital-Readmission-Using-Transformer
  Blog post on Medium
  ☆49Updated 2 years ago
• kormilitzin / med7
  ☆217Updated 5 months ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• dmis-lab / biobert
  Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  ☆2,067Updated last year
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆296Updated 3 years ago
• clinicalml / embeddings
  Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
  ☆247Updated 4 years ago
• NLPatVCU / medaCy
  Medical Text Mining and Information Extraction with spaCy
  ☆438Updated 2 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆329Updated 3 years ago
• medspacy / medspacy
  Library for clinical NLP with spaCy.
  ☆574Updated 3 weeks ago
• ncbi-nlp / NegBio
  High-performance tool for negation and uncertainty detection in radiology reports
  ☆163Updated last year
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆174Updated 4 years ago
• abachaa / MedQuAD
  Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites
  ☆396Updated last year
• Google-Health / records-research
  ☆222Updated 3 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• 3778 / icd-prediction-mimic
  Predicting ICD Codes from Clinical Notes
  ☆61Updated 4 years ago
• abachaa / Existing-Medical-QA-Datasets
  Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
  ☆296Updated last year
• McGill-NLP / medal
  Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…
  ☆271Updated last year
• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆160Updated 3 years ago
• MLforHealth / MIMIC_Extract
  MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III
  ☆443Updated 10 months ago
• hurcy / awesome-ehr-deeplearning
  Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.
  ☆425Updated 2 years ago
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆143Updated 5 months ago