chapmanbe / pyConTextNLPLinks
☆98Updated last year
Alternatives and similar repositories for pyConTextNLP
Users that are interested in pyConTextNLP are comparing it to the libraries listed below
Sorting:
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 3 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Updated last year
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 5 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- Python wraper for MetaMap☆174Updated 4 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Updated 2 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- ☆55Updated 5 years ago
- A near real-time named-entity recognizer☆60Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean,…☆55Updated 8 years ago
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated 2 weeks ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆43Updated 2 years ago
- ☆98Updated 3 years ago
- Utility for cui2vec in Go☆12Updated 2 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- init☆12Updated 6 months ago
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- Health NLP Examples☆89Updated 6 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago