chapmanbe / pyConTextNLP
☆98Updated last year
Alternatives and similar repositories for pyConTextNLP:
Users that are interested in pyConTextNLP are comparing it to the libraries listed below
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Python wraper for MetaMap☆170Updated 4 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆106Updated 10 months ago
- Basic Python 3 tools to interact with UMLS lexica☆124Updated 6 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 7 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 4 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 4 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆60Updated 2 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆28Updated 7 years ago
- ☆96Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆77Updated this week
- Health NLP Examples☆88Updated 6 years ago
- A near real-time named-entity recognizer☆59Updated 8 months ago
- Weakly supervised medical named entity classification☆70Updated 2 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆99Updated 9 months ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated 2 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆40Updated 4 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 5 years ago
- ☆52Updated 4 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month