Alternatives and similar repositories for pyConTextNLP

Users that are interested in pyConTextNLP are comparing it to the libraries listed below

• chb / py-umls
  Basic Python 3 tools to interact with UMLS lexica
  ☆123Updated 6 years ago
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆47Updated 5 years ago
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆108Updated last year
• text-machine-lab / CliNER
  Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…
  ☆234Updated 4 years ago
• gkotsis / negation-detection
  Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean,…
  ☆55Updated 8 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆174Updated 5 years ago
• HHS / uts-rest-api
  A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API
  ☆173Updated 2 years ago
• chapmanbe / negex
  Automatically exported from code.google.com/p/negex
  ☆36Updated 3 years ago
• som-shahlab / ehr-rwe
  Weak supervision methods for extracting real world evidence from EHRs
  ☆34Updated 5 years ago
• ckbjimmy / clneg
  Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification
  ☆21Updated 5 years ago
• dirkweissenborn / ctakes-server
  A simple REST-server around ctakes clinical pipeline.
  ☆30Updated 8 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• kormilitzin / med7
  ☆219Updated 7 months ago
• jakelever / kindred
  A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
  ☆156Updated 2 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• healthnlp / examples
  Health NLP Examples
  ☆89Updated 6 years ago
• clinicalml / embeddings
  Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
  ☆248Updated 4 years ago
• NachusS / Snomed2Vec
  New approach to use Snomed-CT Concept using Word Embedding with Word2vec
  ☆20Updated 6 years ago
• allenai / genia-dependency-trees
  Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.
  ☆22Updated 5 years ago
• clinicalml / ML-tools
  Miscellaneous tools for clinical ML
  ☆29Updated 7 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆83Updated 2 weeks ago
• NIHOPA / NLPre
  Python library for Natural Language Preprocessing (NLPre)
  ☆191Updated 2 years ago
• EpistasisLab / ClinicalDataSources
  Open or Easy Access Clinical Data Sources for Biomedical Research
  ☆175Updated 8 years ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆33Updated last year
• jianlins / PyRuSH
  init
  ☆12Updated 8 months ago
• GoTeamEpsilon / ctakes-rest-service
  A JSON-based rest service to process unstructured clinical text through a smart natural language processing system.
  ☆51Updated 2 years ago
• jgc128 / mednli
  MedNLI - A Natural Language Inference Dataset For The Clinical Domain
  ☆131Updated 2 years ago
• clips / bratreader
  Python code for reading Brat Repositories. Supports saving and reading from XML files for easy acces to annotations.
  ☆42Updated 6 years ago
• gmichalo / UmlsBERT
  ☆99Updated 3 years ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆412Updated 11 months ago